Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15h19
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   1.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   1.8  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   2.4  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    23   2.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   5.6  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   5.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   9.7  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = -3

Query: 604 ILFPTLGMRYSICYMYIIKPLHSTIYVYNPRTPSKIL**IGSICTYYI 461
           I+F    +    C  Y    L    Y+YNPR P   L   GS CT+ I
Sbjct: 30  IMFSMTQVNKEECDYYQNLNLGEIYYIYNPRYP---LPYSGSKCTWTI 74


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 180 WTPITDNHTKTITFSFLNYKNMC 112
           +TP+ D HT  I   F + K  C
Sbjct: 357 YTPVLDCHTAHIACKFADIKEKC 379


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 180 WTPITDNHTKTITFSFLNYKNMC 112
           +TP+ D HT  I   F   K  C
Sbjct: 357 YTPVLDCHTAHIACKFAEIKEKC 379


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -1

Query: 180 WTPITDNHTKTITFSFLNYKNMC 112
           +TP+ D HT  I   F   K  C
Sbjct: 68  YTPVLDCHTAHIACKFAEIKEKC 90


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 619 LIVIRILFPTLGMRYSICYMYIIKPLHSTIYV 524
           L+++ +LF TL +R S C   ++    +T+YV
Sbjct: 137 LLMLYLLFATLPLRLSFC--VVLACSTATVYV 166


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 631 FLMFLIVIRILFPTLGMRYSICYMYIIKPLHSTIYVYN 518
           F M ++ + +LF TL + YS+  + I +    T  +Y+
Sbjct: 2   FKMQILTLGVLFNTLHIIYSVAGLKIFEANPDTKRLYD 39


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 318 LRTIRFADLYTHVFRFEECN 259
           ++TIR A L   VF F++C+
Sbjct: 4   IQTIRIAVLLAIVFLFDKCS 23


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 637 NYFLMFLIVIRILFPTLGMRYSI 569
           NY+L  L V  +LF  LG+ + +
Sbjct: 69  NYYLFNLAVSDLLFLILGLPFEL 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,138
Number of Sequences: 438
Number of extensions: 5588
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)