Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15h08
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   0.58 
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   3.1  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   3.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   4.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   7.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   9.5  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      20   9.5  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.8 bits (49), Expect = 0.58
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -1

Query: 169 KDLAGRNVESCFSLTVKQSK-PAVLNVLGSVT 77
           + L  +N E CFSL  K  K P  L  +  VT
Sbjct: 535 RTLGNQNSEMCFSLKFKNKKLPVFLAEIWDVT 566


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 120 NNPSLLCLMFLAV*RFDLLLAEIN 49
           N PS+ C M+  +  F L+  E N
Sbjct: 66  NEPSITCYMYCLLEAFSLVDDEAN 89


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 120 NNPSLLCLMFLAV*RFDLLLAEIN 49
           N PS+ C M+  +  F L+  E N
Sbjct: 66  NEPSITCYMYCLLEAFSLVDDEAN 89


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +2

Query: 128 ETETRLHITPSQIFASI*VNITWDAAVRFQSHRQQSLPTKDKDTFTPIFRNI 283
           +T +++ +T   +   +  NIT        ++    LPT  K T T +  NI
Sbjct: 17  KTSSKVMLTRGTVNDIVSRNITMVLENLLMNYENNQLPTHGKGTPTVVKTNI 68


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 13/54 (24%), Positives = 20/54 (37%)
 Frame = +2

Query: 35  TVLYGLISAKSKSNRYTAKNIKHSRLGLFHCETETRLHITPSQIFASI*VNITW 196
           TV+Y  +  K+          KHS          ++L I    +F  I +N  W
Sbjct: 733 TVVYAALLTKTNRISRIFNASKHSAKRPSFISPRSQLIICSGLVFVQILINGVW 786


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 324 FCSTYNNMILNLPSMFRNI 268
           FC  +NN   ++ S F N+
Sbjct: 7   FCLRWNNYQSSITSAFENL 25


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -2

Query: 324 FCSTYNNMILNLPSMFRNI 268
           FC  +NN   ++ S F N+
Sbjct: 7   FCLRWNNYQSSITSAFENL 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,148
Number of Sequences: 438
Number of extensions: 1665
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)