Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15g16
         (840 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB031537-1|BAA95120.1|  506|Homo sapiens y+L amino acid transpor...    30   9.1  

>AB031537-1|BAA95120.1|  506|Homo sapiens y+L amino acid
           transporter-1 protein.
          Length = 506

 Score = 30.3 bits (65), Expect = 9.1
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
 Frame = +2

Query: 170 FLSINTIFKQF*MYTSLLR*SLISVMVSGTVRTEE---RLHNKLRNIGCTLGKRALAIYT 340
           ++   T+ +    Y  +L  +LI+V+V+G VR  +      N        +G  ALA+Y+
Sbjct: 175 YVKWGTLVQDIFTYAKVL--ALIAVIVAGIVRLGQASTHFENSFEGSSFAVGDIALALYS 232

Query: 341 NI*IYSGFYGCSVITTE 391
            +  YSG+   + +T E
Sbjct: 233 ALFSYSGWDTLNYVTEE 249


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,785,657
Number of Sequences: 237096
Number of extensions: 2251972
Number of successful extensions: 6760
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 6636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6760
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10593928420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)