Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15g09
         (765 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.3  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   7.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   7.2  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   7.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 729 QKYVIGYFLCKTIEGVIQNLKAAV 658
           QK   GY+LC+ + G+   L A +
Sbjct: 746 QKTNEGYYLCEAVNGIGAGLSAVI 769


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -3

Query: 166 LVEKMSK*YRYMNYAMHTISLPNHFN 89
           ++  +S  Y+Y NY  +  +  N++N
Sbjct: 81  IISSLSNNYKYSNYNNYNNNYNNNYN 106


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -3

Query: 166 LVEKMSK*YRYMNYAMHTISLPNHFN 89
           ++  +S  Y+Y NY  +  +  N++N
Sbjct: 81  IISSLSNNYKYSNYNNYNNNYNNNYN 106


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +3

Query: 504 YLLCVTGGKWNESHHGKNPLN 566
           ++LC++   W   H+  NP N
Sbjct: 294 HILCMSDLHWQLPHNSTNPPN 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,471
Number of Sequences: 438
Number of extensions: 3541
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)