Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15g08
         (435 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   1.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   2.6  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   3.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   3.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   6.0  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +3

Query: 12  YFPIRCMDHSCWQSGHLLFCFTHRDMQQKWKLWLHSPQTTTQSCFPYESFLLSPWHRRHA 191
           YFP   MD          F +T RD++ KW   L S   + +   P   F +    +RH+
Sbjct: 144 YFP---MDRQLCHIEIESFGYTMRDIRYKWNAGLQSVGISNEVELP--QFRVLGHRQRHS 198

Query: 192 SI 197
           +I
Sbjct: 199 TI 200


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = +1

Query: 310 PHGPYHHSLHRT*CMRFNVYGKYLR*LLKIKCVHL---QCSTCL 432
           P  PYH S H+       + G +L   +   CV++    C TC+
Sbjct: 259 PTSPYHVSDHKAAITVGVIMGVFLICWVPFFCVNIVTSYCKTCI 302


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 118 RPKPPHSPASRMSPSCSHPG 177
           +P+PPH    R + S + PG
Sbjct: 80  QPRPPHPRLRREAESEAEPG 99



 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 118 RPKPPHSPASRMSPSCSHPGTEDMRPL 198
           +P+PPH    R +   + PG    RP+
Sbjct: 52  QPRPPHPRLRREAEPKAEPGNN--RPI 76


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 272 EKMECCCNVELGC 234
           E M+C CN  +GC
Sbjct: 81  EGMQCSCNKCIGC 93


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 220 KYHIQHPNSTLQ 255
           KYH Q+PN+ +Q
Sbjct: 724 KYHGQYPNTQIQ 735


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 127  PPHSPASRMSPSCSHPGTEDMRP 195
            PPHSP   ++ + ++  T  +RP
Sbjct: 1366 PPHSPQITLTATTTNSLTMKVRP 1388


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 255 LQCGVGMLNVILALF 211
           + CG+GM+  +L +F
Sbjct: 1   MSCGMGMIKYLLFIF 15


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,324
Number of Sequences: 438
Number of extensions: 3061
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)