Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15g05
(335 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF007192-1|AAC02270.1| 338|Homo sapiens intestinal mucin protein. 35 0.054
AF007191-1|AAC02269.1| 589|Homo sapiens intestinal mucin protein. 33 0.17
AF043724-1|AAC39862.1| 359|Homo sapiens hepatitis A virus cellu... 32 0.50
CR457114-1|CAG33395.1| 364|Homo sapiens HAVCR1 protein. 31 1.2
BC013325-1|AAH13325.1| 364|Homo sapiens HAVCR1 protein protein. 31 1.2
BC068505-1|AAH68505.1| 644|Homo sapiens zinc finger protein 746... 29 3.6
AK128244-1|BAC87351.1| 459|Homo sapiens protein ( Homo sapiens ... 29 3.6
AK055975-1|BAB71061.1| 242|Homo sapiens protein ( Homo sapiens ... 29 3.6
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest... 29 4.7
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest... 29 4.7
U80746-1|AAB91444.1| 358|Homo sapiens CAGH4 protein. 29 4.7
BC104758-1|AAI04759.1| 465|Homo sapiens trinucleotide repeat co... 29 4.7
BC068008-1|AAH68008.1| 407|Homo sapiens TNRC4 protein protein. 29 4.7
AL589765-5|CAI17168.1| 465|Homo sapiens trinucleotide repeat co... 29 4.7
AL589765-3|CAI17166.1| 465|Homo sapiens trinucleotide repeat co... 29 4.7
AB209264-1|BAD92501.1| 441|Homo sapiens trinucleotide repeat co... 29 4.7
X17360-1|CAA35237.1| 255|Homo sapiens hox 5.1 protein protein. 28 6.2
X04706-1|CAA28411.1| 255|Homo sapiens protein ( Human homeobox ... 28 6.2
BC074797-1|AAH74797.1| 255|Homo sapiens homeobox D4 protein. 28 6.2
BC016763-1|AAH16763.1| 255|Homo sapiens homeobox D4 protein. 28 6.2
U50839-1|AAC35207.1| 1123|Homo sapiens g16 protein protein. 28 8.2
BC046643-1|AAH46643.1| 601|Homo sapiens RBM6 protein protein. 28 8.2
AF091264-1|AAD04160.1| 1123|Homo sapiens RNA binding motif prote... 28 8.2
AF069517-1|AAC21578.1| 1123|Homo sapiens RNA binding protein DEF... 28 8.2
>AF007192-1|AAC02270.1| 338|Homo sapiens intestinal mucin protein.
Length = 338
Score = 35.1 bits (77), Expect = 0.054
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -3
Query: 249 WPTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPADLTSSLPLS 85
WPT T ++L T +S +P TN++ + TLP +T S P S
Sbjct: 179 WPTATNTLSSLTTNILSSTPVPSTERTTSHTTNINPVSTLVTTLPTTITRSTPTS 233
>AF007191-1|AAC02269.1| 589|Homo sapiens intestinal mucin protein.
Length = 589
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -3
Query: 246 PTLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPADLTSSLPLS 85
PT T ++L ++ +S ++P + TNL+ + + TLP +T S P S
Sbjct: 400 PTANSTLSSLTSSILSSTLVPSTDMITSHTTNLTRSSPLLATLPTTITRSTPTS 453
>AF043724-1|AAC39862.1| 359|Homo sapiens hepatitis A virus cellular
receptor 1 protein.
Length = 359
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -3
Query: 243 TLKETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPADLTSSLPLSLVLA 73
T+ T T TT T++ +P TT+ T T +STT + T T+S+P++ ++
Sbjct: 149 TVPTTTTVPTTTVPTTMSIPTTTTVPTTMT-VSTTTSVPTTTSIPTTTSVPVTTTVS 204
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 231 TATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPADLTSSLPLSL 82
T +TT RTS +P TT+ T + ++ T T+P +T S S+
Sbjct: 136 TTVPTVTTVRTSTTVPTTTTVPTTTVPTTMSIPTTTTVPTTMTVSTTTSV 185
>CR457114-1|CAG33395.1| 364|Homo sapiens HAVCR1 protein.
Length = 364
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = -3
Query: 213 TTARTSLILPKITTLMETATNLSTTVHITWTLPADLTSSLPLSLVLA 73
TT T++ +P TT++ T T +STT + T T+S+P++ ++
Sbjct: 164 TTVPTTMSIPTTTTVLTTMT-VSTTTSVPTTTSIPTTTSVPVTTTVS 209
>BC013325-1|AAH13325.1| 364|Homo sapiens HAVCR1 protein protein.
Length = 364
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = -3
Query: 213 TTARTSLILPKITTLMETATNLSTTVHITWTLPADLTSSLPLSLVLA 73
TT T++ +P TT++ T T +STT + T T+S+P++ ++
Sbjct: 164 TTVPTTMSIPTTTTVLTTMT-VSTTTSVPTTTSIPTTTSVPVTTTVS 209
>BC068505-1|AAH68505.1| 644|Homo sapiens zinc finger protein 746
protein.
Length = 644
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 172 PNGNGYEPIDNGAYYVDPPR--RPYFKPTPFPGARGG 68
P G Y DNG +DP + RP+ +P +PG G
Sbjct: 397 PEGLPYSSPDNGEAILDPSQAPRPFNEPCKYPGRTKG 433
>AK128244-1|BAC87351.1| 459|Homo sapiens protein ( Homo sapiens
cDNA FLJ46378 fis, clone TESTI4052775. ).
Length = 459
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 172 PNGNGYEPIDNGAYYVDPPR--RPYFKPTPFPGARGG 68
P G Y DNG +DP + RP+ +P +PG G
Sbjct: 212 PEGLPYSSPDNGEAILDPSQAPRPFNEPCKYPGRTKG 248
>AK055975-1|BAB71061.1| 242|Homo sapiens protein ( Homo sapiens
cDNA FLJ31413 fis, clone NT2NE2000259, moderately
similar to OOCYTE ZINC FINGER PROTEIN XLCOF6.1. ).
Length = 242
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 172 PNGNGYEPIDNGAYYVDPPR--RPYFKPTPFPGARGG 68
P G Y DNG +DP + RP+ +P +PG G
Sbjct: 43 PEGLPYSSPDNGEAILDPSQAPRPFNEPCKYPGRTKG 79
>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Frame = -2
Query: 253 AMANAQGNGYEPIDNRPYIVNP----PKDYNPNGNGYEPIDNGAYYVDPPRRPYFKPT 92
A + G+ P + PYI +P Y+P YEP G Y P+ P + PT
Sbjct: 1564 AWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGY---TPQSPSYSPT 1618
>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Frame = -2
Query: 253 AMANAQGNGYEPIDNRPYIVNP----PKDYNPNGNGYEPIDNGAYYVDPPRRPYFKPT 92
A + G+ P + PYI +P Y+P YEP G Y P+ P + PT
Sbjct: 1564 AWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGY---TPQSPSYSPT 1618
>U80746-1|AAB91444.1| 358|Homo sapiens CAGH4 protein.
Length = 358
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 232 NGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPY 104
NGY P+ +P P PNG P + A VDP ++ Y
Sbjct: 173 NGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAY 215
>BC104758-1|AAI04759.1| 465|Homo sapiens trinucleotide repeat
containing 4 protein.
Length = 465
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 232 NGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPY 104
NGY P+ +P P PNG P + A VDP ++ Y
Sbjct: 280 NGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAY 322
>BC068008-1|AAH68008.1| 407|Homo sapiens TNRC4 protein protein.
Length = 407
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 232 NGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPY 104
NGY P+ +P P PNG P + A VDP ++ Y
Sbjct: 222 NGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAY 264
>AL589765-5|CAI17168.1| 465|Homo sapiens trinucleotide repeat
containing 4 protein.
Length = 465
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 232 NGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPY 104
NGY P+ +P P PNG P + A VDP ++ Y
Sbjct: 280 NGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAY 322
>AL589765-3|CAI17166.1| 465|Homo sapiens trinucleotide repeat
containing 4 protein.
Length = 465
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 232 NGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPY 104
NGY P+ +P P PNG P + A VDP ++ Y
Sbjct: 280 NGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAY 322
>AB209264-1|BAD92501.1| 441|Homo sapiens trinucleotide repeat
containing 4 variant protein.
Length = 441
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 232 NGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPRRPY 104
NGY P+ +P P PNG P + A VDP ++ Y
Sbjct: 256 NGYSPVPTQPTGQPAPDALYPNGVHPYPAQSPAAPVDPLQQAY 298
>X17360-1|CAA35237.1| 255|Homo sapiens hox 5.1 protein protein.
Length = 255
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -2
Query: 166 GNGYEPIDNGAYYVDP----PRRPYFKPTPFPGAR 74
G+G EP G +Y P P P P P PGAR
Sbjct: 77 GHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGAR 111
>X04706-1|CAA28411.1| 255|Homo sapiens protein ( Human homeobox
gene (clone HHO.c13). ).
Length = 255
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -2
Query: 166 GNGYEPIDNGAYYVDP----PRRPYFKPTPFPGAR 74
G+G EP G +Y P P P P P PGAR
Sbjct: 77 GHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGAR 111
>BC074797-1|AAH74797.1| 255|Homo sapiens homeobox D4 protein.
Length = 255
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -2
Query: 166 GNGYEPIDNGAYYVDP----PRRPYFKPTPFPGAR 74
G+G EP G +Y P P P P P PGAR
Sbjct: 77 GHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGAR 111
>BC016763-1|AAH16763.1| 255|Homo sapiens homeobox D4 protein.
Length = 255
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Frame = -2
Query: 166 GNGYEPIDNGAYYVDP----PRRPYFKPTPFPGAR 74
G+G EP G +Y P P P P P PGAR
Sbjct: 77 GHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGAR 111
>U50839-1|AAC35207.1| 1123|Homo sapiens g16 protein protein.
Length = 1123
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 158 AVSIRVV-IFGRINDVRAVVNRFVAVSLSVGHSQQSEDENHEEFHFYMITSYHR 316
A ++RVV I ++ ++ + VAV+L+ G + ++ + H+Y Y R
Sbjct: 710 AEALRVVKILQNLDPPFSIDGKMVAVNLATGKRRNDSGDHSDHMHYYQGKKYFR 763
>BC046643-1|AAH46643.1| 601|Homo sapiens RBM6 protein protein.
Length = 601
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 158 AVSIRVV-IFGRINDVRAVVNRFVAVSLSVGHSQQSEDENHEEFHFYMITSYHR 316
A ++RVV I ++ ++ + VAV+L+ G + ++ + H+Y Y R
Sbjct: 188 AEALRVVKILQNLDPPFSIDGKMVAVNLATGKRRNDSGDHSDHMHYYQGKKYFR 241
>AF091264-1|AAD04160.1| 1123|Homo sapiens RNA binding motif protein
6 protein.
Length = 1123
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 158 AVSIRVV-IFGRINDVRAVVNRFVAVSLSVGHSQQSEDENHEEFHFYMITSYHR 316
A ++RVV I ++ ++ + VAV+L+ G + ++ + H+Y Y R
Sbjct: 710 AEALRVVKILQNLDPPFSIDGKMVAVNLATGKRRNDSGDHSDHMHYYQGKKYFR 763
>AF069517-1|AAC21578.1| 1123|Homo sapiens RNA binding protein DEF-3
protein.
Length = 1123
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 158 AVSIRVV-IFGRINDVRAVVNRFVAVSLSVGHSQQSEDENHEEFHFYMITSYHR 316
A ++RVV I ++ ++ + VAV+L+ G + ++ + H+Y Y R
Sbjct: 710 AEALRVVKILQNLDPPFSIDGKMVAVNLATGKRRNDSGDHSDHMHYYQGKKYFR 763
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,347,477
Number of Sequences: 237096
Number of extensions: 1130011
Number of successful extensions: 6288
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 6162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6284
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1794632842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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