Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15g05
(335 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein. 24 0.57
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 0.99
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 0.99
AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex det... 22 2.3
DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex det... 21 3.0
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 21 3.0
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 21 3.0
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 21 3.0
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 21 3.0
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 21 5.3
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 20 7.0
AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex det... 20 9.2
>DQ342041-1|ABC69933.1| 828|Apis mellifera STIP protein.
Length = 828
Score = 23.8 bits (49), Expect = 0.57
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 195 LILPKITTLMETATNLSTTVHI-TWTLP 115
L+LPK+T +E L+ TV I TW P
Sbjct: 518 LVLPKLTLEVEEWNPLTDTVPIHTWIHP 545
Score = 19.8 bits (39), Expect = 9.2
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -1
Query: 143 QRCILRGPSPPTLLQAYPFPWCSRWEVKNILE 48
Q+ R P P L + P W ++NIL+
Sbjct: 485 QQWTCRQPEPLIELIEHWMPLLPNWILENILD 516
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.0 bits (47), Expect = 0.99
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 277 MIFVLALLAMANAQGNGYEPIDNRP-YIVNPP 185
+IFV A A+ +A G+G++ P +++ PP
Sbjct: 6 LIFVGAAAAVTSAGGHGFDAHLRGPSFVMEPP 37
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.0 bits (47), Expect = 0.99
Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 277 MIFVLALLAMANAQGNGYEPIDNRP-YIVNPP 185
+IFV A A+ +A G+G++ P +++ PP
Sbjct: 6 LIFVGAAAAVTSAGGHGFDAHLRGPSFVMEPP 37
>AY569709-1|AAS86662.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 21.8 bits (44), Expect = 2.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 181 DYNPNGNGYEPIDNGAYYVDPPRRPYFKPTPFP 83
+YN N Y+P+ Y++ + P P PFP
Sbjct: 323 NYNNYNNNYKPLHYNINYIE--QIPV--PVPFP 351
>DQ325107-1|ABD14121.1| 176|Apis mellifera complementary sex
determiner protein.
Length = 176
Score = 21.4 bits (43), Expect = 3.0
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -2
Query: 148 IDNGAYYVDPPRRPYFKPT 92
I AY PP P F+PT
Sbjct: 157 IPPNAYRFRPPLNPRFEPT 175
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 3.0
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -2
Query: 148 IDNGAYYVDPPRRPYFKPT 92
I AY PP P F+PT
Sbjct: 160 IPPNAYRFRPPLNPRFEPT 178
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 3.0
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -2
Query: 148 IDNGAYYVDPPRRPYFKPT 92
I AY PP P F+PT
Sbjct: 160 IPPNAYRFRPPLNPRFEPT 178
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 3.0
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -2
Query: 148 IDNGAYYVDPPRRPYFKPT 92
I AY PP P F+PT
Sbjct: 160 IPPNAYRFRPPLNPRFEPT 178
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.4 bits (43), Expect = 3.0
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -2
Query: 148 IDNGAYYVDPPRRPYFKPT 92
I AY PP P F+PT
Sbjct: 160 IPPNAYRFRPPLNPRFEPT 178
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 20.6 bits (41), Expect = 5.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 271 FVLALLAMANAQGNG 227
FV+ +L +A GNG
Sbjct: 57 FVIGMLGFVSAMGNG 71
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 20.2 bits (40), Expect = 7.0
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = -2
Query: 118 PRRPYFKPTPFPGARGGK 65
P++P+ P PG G K
Sbjct: 1128 PQKPFTSPGGIPGPNGIK 1145
>AY569694-1|AAS86647.1| 400|Apis mellifera complementary sex
determiner protein.
Length = 400
Score = 19.8 bits (39), Expect = 9.2
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = -2
Query: 148 IDNGAYYVDPPRRPYFKPT 92
I Y PP P F+PT
Sbjct: 380 IPPNVYRFRPPLNPRFEPT 398
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,901
Number of Sequences: 438
Number of extensions: 2717
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 7591023
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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