Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15f22
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    28   1.8  
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   4.2  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   9.7  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   9.7  

>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
 Frame = -2

Query: 731 ICIHLLGAFISISLFSRRLQWNDSVLGLISNCSKIIG----SLATGFARNTQEMYIAVAI 564
           IC +L G F++  ++SR   ++  +  +++N  +IIG     +  G+  N + +YIA  I
Sbjct: 282 ICDYLFGIFVASWVYSRHYLFSKILRVVVTNAPEIIGGFHLDVPNGYIFN-KPIYIAFII 340

Query: 563 ETF 555
             F
Sbjct: 341 LLF 343


>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 442 VMDVKTSIRLKTEIIFPSSSLETSLEEIDLMAVKEVALKVSIAT 573
           ++DV   + +KT ++F    L+  +E ID   +K+V +   IAT
Sbjct: 67  LLDVHCEV-MKTGMLFNQQILKVIVESIDRFKIKKVVVDPLIAT 109


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -3

Query: 748 LQHVFTSAYTYWVHS 704
           LQ++FT+ YT W H+
Sbjct: 599 LQNIFTTLYTAWCHN 613


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 381 LLRQHYSG-CATCNHFWMVLPTA*KELSKNEMYHY 280
           LL ++YS  CA C   +   P + KEL K+  +H+
Sbjct: 414 LLYENYSNQCANCGRRYGNDPESRKELDKHSDWHF 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,134,038
Number of Sequences: 5004
Number of extensions: 60870
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)