Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15f22
         (813 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0406 + 3197189-3197389,3197491-3197628,3198463-3198544,319...    29   4.4  
02_05_0242 + 27121152-27121316,27121404-27121515,27121616-271217...    29   4.4  
01_06_1221 - 35495427-35496542,35496650-35496839,35496988-354970...    29   4.4  
01_06_0761 + 31788513-31788907,31789010-31789355,31790042-31790284     29   4.4  
08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540...    29   5.8  
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391...    29   5.8  
02_02_0693 + 13006243-13006245,13006439-13006501,13006608-130066...    29   5.8  

>05_01_0406 +
           3197189-3197389,3197491-3197628,3198463-3198544,
           3198658-3198734,3198829-3198935,3199367-3199505,
           3200602-3200718,3200850-3200941,3201096-3201162,
           3201249-3201355,3201468-3201546,3201751-3201894,
           3202095-3202235
          Length = 496

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
 Frame = -2

Query: 548 TSFTAMRSISSKLVSSDELGKMISVFNLIEVLTSMTFSPLYSWIYMFTVKINAG----II 381
           TS T   S +    S+  +       N + + TS+   PLY+  YM      +G    ++
Sbjct: 341 TSLT-FASTTGSFTSNAIMATSFHCVNSLRISTSVISKPLYTVSYMLLTGGVSGFLLLLL 399

Query: 380 YYVSTILAV-PPVIIFGW 330
           YY+  ++ +  P I+F W
Sbjct: 400 YYIVDVINIKKPFILFQW 417


>02_05_0242 +
           27121152-27121316,27121404-27121515,27121616-27121728,
           27122024-27122379,27122515-27122590,27122682-27122768,
           27122885-27122965,27123060-27123092,27123335-27123388,
           27123482-27123523,27123649-27123727,27123813-27123883,
           27123958-27124047
          Length = 452

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = -2

Query: 659 VLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNATSFTAMRSISSKLVSSDELGK-- 486
           ++GL+  C+ +      G A +    Y++      +A    ++R+  SK V S+E G   
Sbjct: 321 IIGLLGGCTHVF---LYGIAWSYWVPYLSAVFIILSAFVHPSIRTNVSKSVGSNEQGIAQ 377

Query: 485 --MISVFNLIEVLTSMTFSPLYSWI 417
             +  + +   +L  + F+PL +W+
Sbjct: 378 GCISGISSFASILAPLIFTPLTAWV 402


>01_06_1221 -
           35495427-35496542,35496650-35496839,35496988-35497061,
           35497407-35497573,35497685-35498018
          Length = 626

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 521 SSKLVSSDELGKMISVFNLIEVLTSMTFSPLYSWIY 414
           SS  VS  E G+M++ F L+  +  +   P+  W Y
Sbjct: 135 SSASVSEPEFGRMMAFFFLVSFVGLLAIVPMRKWFY 170


>01_06_0761 + 31788513-31788907,31789010-31789355,31790042-31790284
          Length = 327

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/90 (23%), Positives = 38/90 (42%)
 Frame = -2

Query: 626 IGSLATGFARNTQEMYIAVAIETFNATSFTAMRSISSKLVSSDELGKMISVFNLIEVLTS 447
           +G   TGF  +T    ++V      +    A+R      V SD     ++V + ++VLT+
Sbjct: 192 LGCSVTGFGEHTDPQLVSVLRSNGTSGLQIALRDGQWVSVPSDRDSFFVNVGDSLQVLTN 251

Query: 446 MTFSPLYSWIYMFTVKINAGIIYYVSTILA 357
             F  +   +   ++K     IY+    LA
Sbjct: 252 GRFKSVKHRVVANSLKSRVSFIYFGGPPLA 281


>08_02_1556 -
           27852247-27852738,27853005-27853197,27854006-27854070,
           27854161-27854199,27854572-27854592,27854819-27855052,
           27855420-27855504,27855953-27856026,27856516-27856647,
           27856735-27856834,27857296-27857361,27857472-27857509,
           27858013-27858219,27858378-27858427,27858871-27858940,
           27859065-27859133,27859456-27859530,27860456-27860530,
           27860887-27860934
          Length = 710

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 582 VYSCRNRNFQCNFFHSH 532
           V SCR  NF CN FH H
Sbjct: 471 VLSCRFGNFLCNSFHKH 487


>04_01_0293 +
           3881375-3883698,3906619-3907636,3907820-3908309,
           3914729-3914823,3914854-3915213
          Length = 1428

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/51 (29%), Positives = 28/51 (54%)
 Frame = -3

Query: 340 FLDGSTYSIKRVVKKRNVPLLLSG*RKPILTVTKSNQRMTTHDTQNQQIEI 188
           F  G+T+S   +    N  + +   R+P++  T SNQ ++ H + + +IEI
Sbjct: 376 FDSGATHSFLSMSFAGNHGMEVEDLRRPLMVSTPSNQALSLHRSPSVRIEI 426


>02_02_0693 +
           13006243-13006245,13006439-13006501,13006608-13006687,
           13007964-13008072,13009027-13009074,13011044-13011203,
           13011295-13011458,13011549-13011902
          Length = 326

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +1

Query: 469 LKTEIIFPSSSLETSLEEIDLMAVKEVALKVSIATAIYISWV 594
           +K   IFP SS  TS  ++DL A+K   +K   A+A+  S V
Sbjct: 262 IKAASIFPESSSSTSKNKLDL-ALKRRNIKAGAASALMASRV 302


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,308,427
Number of Sequences: 37544
Number of extensions: 325763
Number of successful extensions: 669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)