Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15f22
(813 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC048285-1|AAH48285.1| 475|Homo sapiens solute carrier family 4... 60 7e-09
AL139041-1|CAI95196.1| 475|Homo sapiens thymic stromal co-trans... 60 7e-09
AF242557-1|AAK28343.1| 475|Homo sapiens thymic stromal co-trans... 60 7e-09
AK055571-1|BAB70960.1| 475|Homo sapiens protein ( Homo sapiens ... 59 2e-08
DQ496103-1|ABF47092.1| 459|Homo sapiens heme carrier protein 1 ... 39 0.025
AL832613-1|CAD89945.1| 261|Homo sapiens hypothetical protein pr... 39 0.025
AK054669-1|BAB70789.1| 459|Homo sapiens protein ( Homo sapiens ... 39 0.025
BC111541-1|AAI11542.1| 256|Homo sapiens ABCG5 protein protein. 32 2.1
AF320293-1|AAG40003.1| 651|Homo sapiens ABCG5 protein. 32 2.1
AF312715-1|AAG53099.1| 651|Homo sapiens sterolin protein. 32 2.1
>BC048285-1|AAH48285.1| 475|Homo sapiens solute carrier family 46,
member 2 protein.
Length = 475
Score = 60.5 bits (140), Expect = 7e-09
Identities = 37/123 (30%), Positives = 61/123 (49%)
Frame = -2
Query: 710 AFISISLFSRRLQWNDSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNATSFTAM 531
+F+ + +FSR + D+ + +I S G+L F + T YIA A+ F T +
Sbjct: 334 SFLGVLVFSRCFR--DTTMIMIGMVSFGSGALLLAFVKETYMFYIARAVMLFALIPVTTI 391
Query: 530 RSISSKLVSSDELGKMISVFNLIEVLTSMTFSPLYSWIYMFTVKINAGIIYYVSTILAVP 351
RS SKL+ GK+ + L LT + S LY+ IY T+ + G + +S+ L+
Sbjct: 392 RSAMSKLIKGSSYGKVFVILQLSLALTGVVTSTLYNKIYQLTMDMFVGSCFALSSFLSFL 451
Query: 350 PVI 342
+I
Sbjct: 452 AII 454
>AL139041-1|CAI95196.1| 475|Homo sapiens thymic stromal
co-transporter protein.
Length = 475
Score = 60.5 bits (140), Expect = 7e-09
Identities = 37/123 (30%), Positives = 61/123 (49%)
Frame = -2
Query: 710 AFISISLFSRRLQWNDSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNATSFTAM 531
+F+ + +FSR + D+ + +I S G+L F + T YIA A+ F T +
Sbjct: 334 SFLGVLVFSRCFR--DTTMIMIGMVSFGSGALLLAFVKETYMFYIARAVMLFALIPVTTI 391
Query: 530 RSISSKLVSSDELGKMISVFNLIEVLTSMTFSPLYSWIYMFTVKINAGIIYYVSTILAVP 351
RS SKL+ GK+ + L LT + S LY+ IY T+ + G + +S+ L+
Sbjct: 392 RSAMSKLIKGSSYGKVFVILQLSLALTGVVTSTLYNKIYQLTMDMFVGSCFALSSFLSFL 451
Query: 350 PVI 342
+I
Sbjct: 452 AII 454
>AF242557-1|AAK28343.1| 475|Homo sapiens thymic stromal
co-transporter protein.
Length = 475
Score = 60.5 bits (140), Expect = 7e-09
Identities = 37/123 (30%), Positives = 61/123 (49%)
Frame = -2
Query: 710 AFISISLFSRRLQWNDSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNATSFTAM 531
+F+ + +FSR + D+ + +I S G+L F + T YIA A+ F T +
Sbjct: 334 SFLGVLVFSRCFR--DTTMIMIGMVSFGSGALLLAFVKETYMFYIARAVMLFALIPVTTI 391
Query: 530 RSISSKLVSSDELGKMISVFNLIEVLTSMTFSPLYSWIYMFTVKINAGIIYYVSTILAVP 351
RS SKL+ GK+ + L LT + S LY+ IY T+ + G + +S+ L+
Sbjct: 392 RSAMSKLIKGSSYGKVFVILQLSLALTGVVTSTLYNKIYQLTMDMFVGSCFALSSFLSFL 451
Query: 350 PVI 342
+I
Sbjct: 452 AII 454
>AK055571-1|BAB70960.1| 475|Homo sapiens protein ( Homo sapiens
cDNA FLJ31009 fis, clone HLUNG2000142, moderately
similar to Mus musculus putative thymic stromal
co-transporter TSCOT mRNA. ).
Length = 475
Score = 58.8 bits (136), Expect = 2e-08
Identities = 37/123 (30%), Positives = 60/123 (48%)
Frame = -2
Query: 710 AFISISLFSRRLQWNDSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNATSFTAM 531
+F+ + +FSR + D+ + +I S G+L F + T YIA A F T +
Sbjct: 334 SFLGVLVFSRCFR--DTTMIMIGMVSFGSGALLLAFVKETYMFYIARAAMLFALIPVTTI 391
Query: 530 RSISSKLVSSDELGKMISVFNLIEVLTSMTFSPLYSWIYMFTVKINAGIIYYVSTILAVP 351
RS SKL+ GK+ + L LT + S LY+ IY T+ + G + +S+ L+
Sbjct: 392 RSAMSKLIKGSSYGKVFVILQLSLALTGVVTSTLYNKIYQLTMDMFVGSCFALSSFLSFL 451
Query: 350 PVI 342
+I
Sbjct: 452 AII 454
>DQ496103-1|ABF47092.1| 459|Homo sapiens heme carrier protein 1
protein.
Length = 459
Score = 38.7 bits (86), Expect = 0.025
Identities = 25/111 (22%), Positives = 47/111 (42%)
Frame = -2
Query: 665 DSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNATSFTAMRSISSKLVSSDELGK 486
D+ + I I+G + FA T M+ + + +R+ SKLV E G
Sbjct: 331 DAWVAEIGLAFNILGMVVFAFATITPLMFTGYGLLFLSLVITPVIRAKLSKLVRETEQGA 390
Query: 485 MISVFNLIEVLTSMTFSPLYSWIYMFTVKINAGIIYYVSTILAVPPVIIFG 333
+ S + L +T S +++ +Y T+ G + + L + P ++ G
Sbjct: 391 LFSAVACVNSLAMLTASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAVLIG 441
>AL832613-1|CAD89945.1| 261|Homo sapiens hypothetical protein
protein.
Length = 261
Score = 38.7 bits (86), Expect = 0.025
Identities = 25/111 (22%), Positives = 47/111 (42%)
Frame = -2
Query: 665 DSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNATSFTAMRSISSKLVSSDELGK 486
D+ + I I+G + FA T M+ + + +R+ SKLV E G
Sbjct: 133 DAWVAEIGLAFNILGMVVFAFATITPLMFTGYGLLFLSLVITPVIRAKLSKLVRETEQGA 192
Query: 485 MISVFNLIEVLTSMTFSPLYSWIYMFTVKINAGIIYYVSTILAVPPVIIFG 333
+ S + L +T S +++ +Y T+ G + + L + P ++ G
Sbjct: 193 LFSAVACVNSLAMLTASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAVLIG 243
>AK054669-1|BAB70789.1| 459|Homo sapiens protein ( Homo sapiens
cDNA FLJ30107 fis, clone BNGH41000198, weakly similar to
TETRACYCLINE RESISTANCE PROTEIN, CLASS E. ).
Length = 459
Score = 38.7 bits (86), Expect = 0.025
Identities = 25/111 (22%), Positives = 47/111 (42%)
Frame = -2
Query: 665 DSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNATSFTAMRSISSKLVSSDELGK 486
D+ + I I+G + FA T M+ + + +R+ SKLV E G
Sbjct: 331 DAWVAEIGLAFNILGMVVFAFATITPLMFTGYGLLFLSLVITPVIRAKLSKLVRETEQGA 390
Query: 485 MISVFNLIEVLTSMTFSPLYSWIYMFTVKINAGIIYYVSTILAVPPVIIFG 333
+ S + L +T S +++ +Y T+ G + + L + P ++ G
Sbjct: 391 LFSAVACVNSLAMLTASGIFNSLYPATLNFMKGFPFLLGAGLLLIPAVLIG 441
>BC111541-1|AAI11542.1| 256|Homo sapiens ABCG5 protein protein.
Length = 256
Score = 32.3 bits (70), Expect = 2.1
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = -2
Query: 722 HLLGAFISISLFSRRLQWN--DSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNA 549
HL+G F+++ L N +SV+ L+S ++GS GF RN QEM I I ++
Sbjct: 115 HLIGEFLTLVLLGIVQNPNIVNSVVALLSIAGVLVGS---GFLRNIQEMPIPFKIISY-- 169
Query: 548 TSFTAMRSISSKLVSSDELG 489
FT + S LV ++ G
Sbjct: 170 --FTFQKYCSEILVVNEFYG 187
>AF320293-1|AAG40003.1| 651|Homo sapiens ABCG5 protein.
Length = 651
Score = 32.3 bits (70), Expect = 2.1
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = -2
Query: 722 HLLGAFISISLFSRRLQWN--DSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNA 549
HL+G F+++ L N +SV+ L+S ++GS GF RN QEM I I ++
Sbjct: 510 HLIGEFLTLVLLGIVQNPNIVNSVVALLSIAGVLVGS---GFLRNIQEMPIPFKIISY-- 564
Query: 548 TSFTAMRSISSKLVSSDELG 489
FT + S LV ++ G
Sbjct: 565 --FTFQKYCSEILVVNEFYG 582
>AF312715-1|AAG53099.1| 651|Homo sapiens sterolin protein.
Length = 651
Score = 32.3 bits (70), Expect = 2.1
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = -2
Query: 722 HLLGAFISISLFSRRLQWN--DSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNA 549
HL+G F+++ L N +SV+ L+S ++GS GF RN QEM I I ++
Sbjct: 510 HLIGEFLTLVLLGIVQNPNIVNSVVALLSIAGVLVGS---GFLRNIQEMPIPFKIISY-- 564
Query: 548 TSFTAMRSISSKLVSSDELG 489
FT + S LV ++ G
Sbjct: 565 --FTFQKYCSEILVVNEFYG 582
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,953,466
Number of Sequences: 237096
Number of extensions: 1999179
Number of successful extensions: 10539
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10539
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10092110758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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