Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15f22
         (813 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82060-2|CAB04882.1|  421|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z81132-13|CAB03427.2|  308|Caenorhabditis elegans Hypothetical p...    29   3.0  
AC006619-2|AAK68254.1|  434|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC024876-12|AAF60896.2|  498|Caenorhabditis elegans Hypothetical...    28   6.9  
AF022973-2|AAC25800.2|  527|Caenorhabditis elegans Hypothetical ...    28   9.1  
AF022973-1|AAT81194.1|  513|Caenorhabditis elegans Hypothetical ...    28   9.1  

>Z82060-2|CAB04882.1|  421|Caenorhabditis elegans Hypothetical
           protein T27F6.2 protein.
          Length = 421

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/63 (23%), Positives = 37/63 (58%)
 Frame = -2

Query: 560 TFNATSFTAMRSISSKLVSSDELGKMISVFNLIEVLTSMTFSPLYSWIYMFTVKINAGII 381
           TF++T+ +    IS++   + + G + S+ + +E+    TF+P +++ Y+  +  N G +
Sbjct: 172 TFSSTTNSINTFISAQGTCAQDCGYLASIHSPLEIRYINTFAP-HAYFYIGAIWKNDGSL 230

Query: 380 YYV 372
           Y++
Sbjct: 231 YWL 233


>Z81132-13|CAB03427.2|  308|Caenorhabditis elegans Hypothetical
           protein T26E4.14 protein.
          Length = 308

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -2

Query: 500 DELGKMISVFNLIEVLTSMTFSPLYSWIYMFTVK--INAGIIYYVSTILAVPPVIIFGW 330
           + LG    VF L   + ++  SP+Y+++YM   K  +N+ +     ++     +++ GW
Sbjct: 154 ESLGHAYDVFALTSFVINLFVSPIYAYVYMKIKKMGLNSSMKAVFKSLTITVCLVLCGW 212


>AC006619-2|AAK68254.1|  434|Caenorhabditis elegans Hypothetical
           protein C46C11.2 protein.
          Length = 434

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/108 (18%), Positives = 50/108 (46%)
 Frame = -2

Query: 725 IHLLGAFISISLFSRRLQWNDSVLGLISNCSKIIGSLATGFARNTQEMYIAVAIETFNAT 546
           + ++G  + +  F R   + D+ +  ++  S     L  G A+ +  ++ ++A  + +  
Sbjct: 266 VQIVGMAVGMLFFKRIFHFRDTFIICLAILSMTGCVLMIGLAQASWLIFASLAPGSLHGL 325

Query: 545 SFTAMRSISSKLVSSDELGKMISVFNLIEVLTSMTFSPLYSWIYMFTV 402
                 +  + +V  DE+GK  ++ ++ + L  +  S +   IY+ TV
Sbjct: 326 LNPMSYTFIACIVEQDEIGKAYAISSVAQKLAGIAQSLVLQNIYIATV 373


>AC024876-12|AAF60896.2|  498|Caenorhabditis elegans Hypothetical
           protein Y94H6A.1 protein.
          Length = 498

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
 Frame = +1

Query: 421 QE*SGLNVMDVKTSI-RLKTEIIFPSSSLETSLEEIDLM 534
           QE SGL+  + +T++ R  +EI+ P  SL+ S+EE+ LM
Sbjct: 338 QELSGLS-FEAQTAVHRAISEIMEPMDSLDVSIEELVLM 375


>AF022973-2|AAC25800.2|  527|Caenorhabditis elegans Hypothetical
           protein F25G6.7a protein.
          Length = 527

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 8/17 (47%), Positives = 16/17 (94%)
 Frame = -2

Query: 386 IIYYVSTILAVPPVIIF 336
           +++Y+ST++A+ P+IIF
Sbjct: 466 LVFYISTVIAIFPIIIF 482


>AF022973-1|AAT81194.1|  513|Caenorhabditis elegans Hypothetical
           protein F25G6.7b protein.
          Length = 513

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 8/17 (47%), Positives = 16/17 (94%)
 Frame = -2

Query: 386 IIYYVSTILAVPPVIIF 336
           +++Y+ST++A+ P+IIF
Sbjct: 452 LVFYISTVIAIFPIIIF 468


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,075,329
Number of Sequences: 27780
Number of extensions: 331295
Number of successful extensions: 874
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)