Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15f22
         (813 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    23   2.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   7.8  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 664 SFHCNLRLNRLIEMNAPNKCMQM*KRVVETVVQS 765
           S +    L++LIE N P +C ++  R    V+ S
Sbjct: 155 SLNLETYLDKLIEKNEPIECRELTARFTTDVIGS 188


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 416 YMFTVKINAGIIYYVSTILA 357
           Y+FT  INA  +   STIL+
Sbjct: 5   YVFTTLINAAFLCLASTILS 24


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 530  RSISSKLVSSDELGKMISVFNLI 462
            + I +K+++S   G++ISV NL+
Sbjct: 1111 QKILAKVLTSSNSGQLISVENLL 1133


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 354 HSQNSADVINNTGVYFNGEHIDP 422
           ++ N+ D+  +TG+   G H DP
Sbjct: 265 NNNNNGDMFCHTGLGHYGHHPDP 287


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,503
Number of Sequences: 438
Number of extensions: 4511
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)