Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15f21
         (564 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0471 + 34169562-34169892,34170121-34170347                       37   0.013
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           34   0.068
02_04_0382 - 22501041-22501279,22501717-22501810                       30   1.1  
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    30   1.5  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    29   1.9  
04_03_0904 + 20717005-20718087                                         27   7.8  
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676...    27   7.8  

>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 36.7 bits (81), Expect = 0.013
 Identities = 31/98 (31%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
 Frame = -1

Query: 354 SNPDPGFSRPV-IGQPGYVPISTG----PAYVXXXXXXXXXXXNGYEPIDNRPYIVNPPK 190
           SN D GF      G PG  P+  G    P                Y P    P    PP 
Sbjct: 11  SNADKGFHGAYPSGYPGAYPLMQGYPNSPGQYPTPGGYPSAPPGQYPPAGGYPGAQYPPS 70

Query: 189 DYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 85
            Y P+  GY P   GAY   PP G   +P + P  +PG
Sbjct: 71  GYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 34.3 bits (75), Expect = 0.068
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -1

Query: 234 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFKPTPFPGARG 76
           Y P  + P  V PP  Y P  +G  P     N + Y +PP GRP   P P  GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448


>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 189 DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARGG 73
           D  P+ + Y+P  +  YY DPP    Y+ P P P   GG
Sbjct: 55  DPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPSPYYGGG 92


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
 Frame = -1

Query: 216 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 100
           +PY   P   P    P G  Y P   G  Y  PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = -1

Query: 228 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 88
           P  + P IV  P  Y P+   YEP     Y  +PP   PY  P  FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -1

Query: 201 NPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 88
           NPP  Y P    Y+P         PP  +P  KPTP P
Sbjct: 237 NPPPTYKPAPPTYKPQPKPN---PPPTYKPQPKPTPTP 271


>03_05_0937 -
           28967038-28967245,28967348-28967556,28967584-28967644,
           28967926-28968742,28968960-28971024
          Length = 1119

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = -3

Query: 148 RCILRGPSPR-PTLLQAYPFPWCSRW 74
           + I+  PSP  P +  A  F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,821,533
Number of Sequences: 37544
Number of extensions: 328999
Number of successful extensions: 852
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)