Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15f18
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 392 e-110
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 196 2e-51
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 182 5e-47
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 121 1e-28
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 103 3e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 96 5e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 1e-20
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 69 6e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 31 0.25
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr... 31 0.25
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 1.0
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.4
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 28 1.8
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 28 1.8
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.8
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 3.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 27 3.1
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 27 4.1
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 7.2
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 26 7.2
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 25 9.5
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 392 bits (964), Expect = e-110
Identities = 184/208 (88%), Positives = 194/208 (93%)
Frame = -1
Query: 803 GYAXPHAILXLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 624
GYA PHAI+ LDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALDFEQE+
Sbjct: 168 GYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFEQEL 227
Query: 623 ATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDV 444
TAA SSSLEKSYELPDGQVITIGNERFR PEALFQPS LG+E GIHE TYNSIMKCDV
Sbjct: 228 QTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDV 287
Query: 443 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 264
DIRKDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILA
Sbjct: 288 DIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILA 347
Query: 263 SLSTFQQMWISKQEYDESGPSIVHRKCF 180
SLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 348 SLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 196 bits (479), Expect = 2e-51
Identities = 91/208 (43%), Positives = 137/208 (65%)
Frame = -1
Query: 803 GYAXPHAILXLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 624
G++ P AI ++ GRD+TDYL L + G+ ++AE+EIVR+IKEK CYVA DF E+
Sbjct: 173 GFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEI 232
Query: 623 ATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDV 444
+ +Y+LPD Q IT+G E F PE LF P +G EA+G+H + SI+ D+
Sbjct: 233 ESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDI 292
Query: 443 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 264
D+R LY+N VLSGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILA
Sbjct: 293 DLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILA 352
Query: 263 SLSTFQQMWISKQEYDESGPSIVHRKCF 180
SLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 353 SLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 182 bits (443), Expect = 5e-47
Identities = 91/206 (44%), Positives = 135/206 (65%), Gaps = 12/206 (5%)
Frame = -1
Query: 788 HAILXLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAS 609
H + LD+AGRD T YL+ +L +GY+F TA+ E VR++KEKLCYV+ D E + +
Sbjct: 173 HLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLELDHKLSEE 232
Query: 608 SSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDVDIRKD 429
++ L ++Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK
Sbjct: 233 TTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKY 292
Query: 428 LYANTVLSGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 282
LY VLSGG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
Query: 281 GGSILAS-LSTFQQMWISKQEYDESG 207
GG++LA ++ MW+SK E++E G
Sbjct: 353 GGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 121 bits (291), Expect = 1e-28
Identities = 70/179 (39%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Frame = -1
Query: 710 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 531
S+ +R ++ + KE + V LD + A A+S + K +E PDG G ERFR
Sbjct: 243 SYEIFQKRRVIEEWKESVLDV-LDTPFDEAKASSRNP--KPFEFPDGVTHKFGQERFRIS 299
Query: 530 EALFQPSFLGMEAN---------GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 378
E LF PSF + G+HE Y SI+ CD ++R L N V++GGT++ PG+
Sbjct: 300 EILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIVVTGGTSLIPGL 359
Query: 377 ADRMQKEITALAP-STMKIKII-APPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 207
++R+Q E+ LA S + + +VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 360 SERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 103 bits (247), Expect = 3e-23
Identities = 69/220 (31%), Positives = 108/220 (49%), Gaps = 20/220 (9%)
Frame = -1
Query: 785 AILXLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASS 606
A+ +D+ G+ LT+YL ++++ R Y+ E IV +IKE +CYV+ +F+++M
Sbjct: 182 AVKRVDVGGKLLTNYLKEVISYRKYNMME--ETYIVNEIKESVCYVSQNFKEDMEICHEK 239
Query: 605 --SSLEKSYELPD------------------GQVITIGNERFRCPEALFQPSFLGMEANG 486
S LE Y LPD QV+ + NERF PE LF PS + + G
Sbjct: 240 PRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNLSNERFMIPELLFSPSDIEIREAG 299
Query: 485 IHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP 306
I E S+ +I+ L N V GG +PG R+ E+ +LAP+ ++K+ P
Sbjct: 300 IPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPS 359
Query: 305 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRK 186
+ W S + L + I++ EY E G +I+ RK
Sbjct: 360 DPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 96.3 bits (229), Expect = 5e-21
Identities = 69/226 (30%), Positives = 106/226 (46%), Gaps = 21/226 (9%)
Frame = -1
Query: 803 GYAXPHAILXLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYVALDFEQ 630
GY +I + LAGRD+T ++ +L +R S TAER IKE+ CYV D +
Sbjct: 199 GYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPDIVK 253
Query: 629 EMATAASSSS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFLGME-ANGIHETTYN 465
E + L+ + E G TI G ERF PE F P + + E N
Sbjct: 254 EFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDN 313
Query: 464 SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST--------------MK 327
+ +D+RK LY N VLSGG+T++ +R+Q+++ + +
Sbjct: 314 VVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVD 373
Query: 326 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 189
+ +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 1e-20
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -1
Query: 488 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 309
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 308 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 183
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 69.3 bits (162), Expect = 6e-13
Identities = 31/118 (26%), Positives = 62/118 (52%)
Frame = -1
Query: 548 ERFRCPEALFQPSFLGMEANGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 369
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 368 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 195
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 434 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 264
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 263 SLSTFQQMWISKQEYDESGPSIVHRK 186
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 30.7 bits (66), Expect = 0.25
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = -2
Query: 682 SFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNP 512
+F +R S A + SS R P +P+AP+R PTV++S S A+ ++ P
Sbjct: 335 AFTANRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 30.7 bits (66), Expect = 0.25
Identities = 21/86 (24%), Positives = 38/86 (44%)
Frame = -1
Query: 692 EREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQP 513
E +I + K ++ D Q+ T+ SSL SYE + + ++ P + F+P
Sbjct: 81 ELDIAKSDSYKYTFIIKDCHQDWETSDEKSSL--SYEYDFTPIYSKEDQVVSIPFSEFKP 138
Query: 512 SFLGMEANGIHETTYNSIMKCDVDIR 435
++ G G E + I + + IR
Sbjct: 139 TYRGRPVEGAPELDVSKITQFSIMIR 164
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 1.0
Identities = 20/79 (25%), Positives = 40/79 (50%)
Frame = -2
Query: 673 TSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWK 494
+S S ++SLS+SS ++ S +++ + SSP+ T +++ SS+
Sbjct: 245 SSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTS 304
Query: 493 PTASTRPHTTPS*SATWTS 437
T S+ ++ S S+T +S
Sbjct: 305 STISSSSSSSSSFSSTLSS 323
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 28.3 bits (60), Expect = 1.4
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = -2
Query: 622 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKPTASTRPHTTPS 458
PP+ +PS SL P S + + S R ++ +S + KP+ P T S
Sbjct: 217 PPIEEYSPSVSLPTSPVAEESYNNVQRSSTVRNNTTQKSVLKKPSRKMSPAYTSS 271
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -2
Query: 646 LSTSSRRWPPL--HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWV 500
LS + WP L HP P R P++ + P +T S + S +P S+V
Sbjct: 107 LSDLQKHWPSLKPHPLPPKRVSLGIPSISNPPVDTVISDSP-TSPHPPSFV 156
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.9 bits (59), Expect = 1.8
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = -2
Query: 673 TSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSW 503
TS ATS S S P P +PS S T+ +SPS + S + +S +P S
Sbjct: 1602 TSPSYSATSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1660
Query: 502 VWKPTASTRPHTTPS*SAT 446
+ PT+ + T+PS S T
Sbjct: 1661 SYSPTSPSYSPTSPSYSPT 1679
Score = 26.6 bits (56), Expect = 4.1
Identities = 23/79 (29%), Positives = 38/79 (48%)
Frame = -2
Query: 682 SFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSW 503
+++ S S + + + S P P +PS S T+ +SPS + S S +P S
Sbjct: 1570 AYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSP----SYSPTSP 1625
Query: 502 VWKPTASTRPHTTPS*SAT 446
+ PT+ + T+PS S T
Sbjct: 1626 SYSPTSPSYSPTSPSYSPT 1644
Score = 26.6 bits (56), Expect = 4.1
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 622 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 452
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1597 PSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1656
Query: 451 AT 446
T
Sbjct: 1657 PT 1658
Score = 26.2 bits (55), Expect = 5.5
Identities = 26/76 (34%), Positives = 36/76 (47%)
Frame = -2
Query: 673 TSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWK 494
TS TS S S+ P P +PS S T+ +SPS + S S +P S +
Sbjct: 1595 TSPSYSPTSPSYSATS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPSYS 1649
Query: 493 PTASTRPHTTPS*SAT 446
PT+ + T+PS S T
Sbjct: 1650 PTSPSYSPTSPSYSPT 1665
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 622 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 452
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1625 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1684
Query: 451 AT 446
T
Sbjct: 1685 PT 1686
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 622 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 452
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1632 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1691
Query: 451 AT 446
T
Sbjct: 1692 PT 1693
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 622 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 452
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1639 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1698
Query: 451 AT 446
T
Sbjct: 1699 PT 1700
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 622 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 452
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1646 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1705
Query: 451 AT 446
T
Sbjct: 1706 PT 1707
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 622 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 452
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1653 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1712
Query: 451 AT 446
T
Sbjct: 1713 PT 1714
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 622 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 452
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1660 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1719
Query: 451 AT 446
T
Sbjct: 1720 PT 1721
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 622 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 452
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1667 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1726
Query: 451 AT 446
T
Sbjct: 1727 PT 1728
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 622 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 452
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1674 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1733
Query: 451 AT 446
T
Sbjct: 1734 PT 1735
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 622 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 452
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1740
Query: 451 AT 446
T
Sbjct: 1741 PT 1742
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -2
Query: 622 PPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSS---NPRSWVWKPTASTRPHTTPS*S 452
P P +PS S T+ +SPS + S + +S +P S + PT+ + T+PS S
Sbjct: 1688 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1747
Query: 451 AT 446
T
Sbjct: 1748 PT 1749
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.8
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 287 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 186
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = -2
Query: 661 SCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRS 506
S ++ TS R PP + + SL N P RSS E D V + P++
Sbjct: 40 SPVSTARTSIARRPPSTVGSQTGSLVNAPPKRSSGIERFDHVTGTAENRPQT 91
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = -2
Query: 622 PPLHPAA-PSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKPTASTRPH 470
PP HPA+ SR + ++ TV+SSPS T ++L + P++ T S+ P+
Sbjct: 75 PPQHPASINSRRVASY-TVQSSPSRT---TYRQLPNEPQNSAAYTTYSSFPN 122
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 26.6 bits (56), Expect = 4.1
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Frame = -1
Query: 641 DFEQEMATAASSSSLEKSY--ELPDGQ-VITIGNERFRCPEALFQPSFLG-MEANGIHET 474
D E++ SS+ + +Y + + Q ++T+ NE + E L S + E+
Sbjct: 108 DDHPEISGHVSSNDKDFAYFEDKSENQPLVTLPNENNQVIEPLSSQSCKSQLSTQNYSES 167
Query: 473 TYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKY 294
+ CD+D ++ + + T ++P AD I ++K A RKY
Sbjct: 168 DFGWNQLCDLD---PIFKSLAFTDDTNLFPAFADSEAALIMLKKREMTRVKHRAGRPRKY 224
Query: 293 S 291
S
Sbjct: 225 S 225
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 362 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 252
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -2
Query: 613 HPAAPSRSLTNFPTVRSSPSETKDSV--AQRLSSNPR 509
HPA+ SLTN ++ + P+ D + S +PR
Sbjct: 131 HPASVENSLTNVNSIHAQPTTISDMIDLTDETSYDPR 167
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 549 VSDGDDLTVGKFVRLLEGAAGCSGGHLLLEVESDVAQLLLDV 674
V+ GDD++VGK L G G L+ ++ A L LD+
Sbjct: 135 VAVGDDVSVGKKRGALVGRRGLGATVLVHKIAGSAAALGLDL 176
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 9.5
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Frame = -2
Query: 682 SFVTSRRSCATSLSTSSRRWPPLHPAAPSRSLTNFPTVRS-SPSETKDSVAQRLSSNPRS 506
S V+S S TSLSTS + PA S V S + S T S SS S
Sbjct: 879 SVVSSSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWTAETSS---S 935
Query: 505 WVWKPTASTRPHTTPS*SATWTS 437
+ A++ T+ S +++W+S
Sbjct: 936 AITSSVAASVTPTSSSSASSWSS 958
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,369,758
Number of Sequences: 5004
Number of extensions: 72485
Number of successful extensions: 315
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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