Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15f17
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   3.4  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    26   3.4  
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    26   3.4  
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.4  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   4.5  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   5.9  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   5.9  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   7.8  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   7.8  

>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -2

Query: 182 VXRYARLRSESRGCXLPENRTTPDFLNN*TYILNSSTDHQHLFLF 48
           +    R    S GC    N T PD     +Y + + TD  +L  F
Sbjct: 406 IAEIGRFNCSSSGCDYATNVTCPDSYTAVSYEMMALTDDSYLSFF 450


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -2

Query: 182 VXRYARLRSESRGCXLPENRTTPDFLNN*TYILNSSTDHQHLFLF 48
           +    R    S GC    N T PD     +Y + + TD  +L  F
Sbjct: 326 IAEIGRFNCSSSGCDYATNVTCPDSYTAVSYEMMALTDDSYLSFF 370


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 403 SKASKELVAKRTEQMKKFSEYRESKIQEWNEQKPR 299
           S A KE+V +  E+    +    S+I+ W E KP+
Sbjct: 207 SSAEKEIVREIKEKCCYVASDFRSEIESWTEHKPQ 241


>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 17/60 (28%), Positives = 30/60 (50%)
 Frame = -3

Query: 442 YYSQFECKDRMRSSKASKELVAKRTEQMKKFSEYRESKIQEWNEQKPRRLXLRDYVDTXG 263
           Y   F+ K+R     + KE+ AK T+Q +K +E     +++   ++ R+   RDY    G
Sbjct: 226 YQFSFDEKEREEQLLSLKEIHAKVTQQQRKNTE-DVLTLRDKKLEERRKFLERDYAIKLG 284


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 427  ECKDRMRSSKASKELVAKRTEQMKKFSEYRESKIQE 320
            E K++MR  K  +    +R +QM+KF +    K +E
Sbjct: 1127 EWKEKMREYKKWQSTANQRAKQMEKFEKSATEKQKE 1162


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +2

Query: 50  TETNADDQLTSLKCMFNYLKNPVLSGS-RGGRSLLTPT 160
           TET  DD   S K    Y+K+ +++ S +GG S +  T
Sbjct: 124 TETQFDDDRDSTKLSSEYVKDDIVNKSTKGGVSPIKET 161


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1201

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 430  FECKDRMRSSKASKELVAKRTEQMKKFSEYRESKIQE 320
            ++C    +  KA K+L  K+    K   E +ESK +E
Sbjct: 1033 YDCCQVSKREKAYKQLKQKKLNNAKDAHEMQESKNEE 1069


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 355 SSSAQYA*PPVPCWLCYCAYD 417
           + +A+Y      CW+CY  YD
Sbjct: 2   TDTAKYEKSSARCWICYEEYD 22


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
 Frame = -3

Query: 415  RMRSSKASKELVAKRTEQM-----KKFSEYRESKIQEW 317
            ++R    ++++ A+ +EQ+      K  +YR+SK +EW
Sbjct: 1271 KIRYENGTEDVFARNSEQVYNGPYDKIRDYRQSKWREW 1308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,383,247
Number of Sequences: 5004
Number of extensions: 21128
Number of successful extensions: 56
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)