Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15f17
         (480 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0339 - 3003626-3004070,3004467-3004636,3004907-3005020,300...    29   2.6  
08_01_0353 - 3107628-3107774,3108177-3108213,3108248-3109164,310...    28   4.5  
07_03_1392 - 26238885-26239007,26239137-26239235,26239636-262397...    27   7.9  
03_04_0044 + 16754638-16754676,16755472-16755598,16756325-167564...    27   7.9  
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001...    27   7.9  

>08_01_0339 -
           3003626-3004070,3004467-3004636,3004907-3005020,
           3005592-3005704,3005848-3005926
          Length = 306

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 400 KASKELVAKRTEQMKKFSEYRESKIQEWNEQ 308
           ++S   ++K  E   KF E +E K+QEW  Q
Sbjct: 267 ESSSTDISKSVENYNKFKEEQELKLQEWLRQ 297


>08_01_0353 -
           3107628-3107774,3108177-3108213,3108248-3109164,
           3109210-3110952
          Length = 947

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = -3

Query: 418 DRMRSSKASKELVAKRTEQMKKFSEYRESKIQEWNEQK 305
           D   S +  ++++ +  +++ +  E R  +++EW EQK
Sbjct: 11  DEEESERRRQKMIEEEKKRLDEEMELRRRRVKEWQEQK 48


>07_03_1392 -
           26238885-26239007,26239137-26239235,26239636-26239720,
           26239825-26240028,26240360-26240682,26241904-26242575
          Length = 501

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 397 ASKELVAKRTEQMKKFSEYRESKIQEWNEQKPR 299
           A+K   A+R   MK   E  E K+Q   EQK R
Sbjct: 459 ATKVFKARRLANMKMADEGHEDKVQARKEQKKR 491


>03_04_0044 +
           16754638-16754676,16755472-16755598,16756325-16756451,
           16756866-16757431,16757896-16758211,16758373-16758613,
           16758734-16758823,16759343-16759780,16759877-16760185,
           16760392-16760406
          Length = 755

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 295 AGAASARSIPGS*THGTPRTSSSAQY 372
           +G +S  S P S TH + R SSS+QY
Sbjct: 249 SGVSSKNSRPSSSTHLSSRPSSSSQY 274


>01_05_0147 +
           18597194-18597643,18598347-18598681,18600073-18600147,
           18600325-18600427,18601554-18601642,18602953-18603064,
           18604093-18604146,18604271-18604319,18606236-18606347,
           18606389-18606436,18607000-18607327
          Length = 584

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 418 DRMRSSKASKELVAKRTEQMKKFSEYRESKIQEWNEQKP 302
           D   SSK S  LV K  E  K+  + ++   +EW    P
Sbjct: 504 DTYNSSKRSVSLVQKHRESKKEKKKQKQRDKEEWEGNHP 542


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,790,059
Number of Sequences: 37544
Number of extensions: 130066
Number of successful extensions: 371
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)