Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15f17
         (480 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122066-1|AAM52578.1|  690|Drosophila melanogaster AT09438p pro...    80   1e-15
AE013599-2499|AAG22261.1|  690|Drosophila melanogaster CG4878-PB...    80   1e-15
AE013599-2498|AAF57842.1|  690|Drosophila melanogaster CG4878-PA...    80   1e-15
AE014134-1194|AAF52458.2| 1833|Drosophila melanogaster CG18304-P...    30   1.9  

>AY122066-1|AAM52578.1|  690|Drosophila melanogaster AT09438p
           protein.
          Length = 690

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 36/67 (53%), Positives = 49/67 (73%)
 Frame = -3

Query: 442 YYSQFECKDRMRSSKASKELVAKRTEQMKKFSEYRESKIQEWNEQKPRRLXLRDYVDTXG 263
           YY+ FE KDR+R ++ASKEL+ KR++  + F EYR  +I EW EQK RR+ LR +VDT  
Sbjct: 608 YYAAFEQKDRLRLTRASKELLEKRSQLRETFMEYRNKRIAEWAEQKSRRIMLRGHVDTDN 667

Query: 262 LDTDAVN 242
           L+TD V+
Sbjct: 668 LETDEVD 674


>AE013599-2499|AAG22261.1|  690|Drosophila melanogaster CG4878-PB,
           isoform B protein.
          Length = 690

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 36/67 (53%), Positives = 49/67 (73%)
 Frame = -3

Query: 442 YYSQFECKDRMRSSKASKELVAKRTEQMKKFSEYRESKIQEWNEQKPRRLXLRDYVDTXG 263
           YY+ FE KDR+R ++ASKEL+ KR++  + F EYR  +I EW EQK RR+ LR +VDT  
Sbjct: 608 YYAAFEQKDRLRLTRASKELLEKRSQLRETFMEYRNKRIAEWAEQKSRRIMLRGHVDTDN 667

Query: 262 LDTDAVN 242
           L+TD V+
Sbjct: 668 LETDEVD 674


>AE013599-2498|AAF57842.1|  690|Drosophila melanogaster CG4878-PA,
           isoform A protein.
          Length = 690

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 36/67 (53%), Positives = 49/67 (73%)
 Frame = -3

Query: 442 YYSQFECKDRMRSSKASKELVAKRTEQMKKFSEYRESKIQEWNEQKPRRLXLRDYVDTXG 263
           YY+ FE KDR+R ++ASKEL+ KR++  + F EYR  +I EW EQK RR+ LR +VDT  
Sbjct: 608 YYAAFEQKDRLRLTRASKELLEKRSQLRETFMEYRNKRIAEWAEQKSRRIMLRGHVDTDN 667

Query: 262 LDTDAVN 242
           L+TD V+
Sbjct: 668 LETDEVD 674


>AE014134-1194|AAF52458.2| 1833|Drosophila melanogaster CG18304-PA
            protein.
          Length = 1833

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = -3

Query: 421  KDRMRSSKASKELVAKRTEQMKKFSEYRESKIQEWNEQK 305
            + R+ SSK   ELV++R+    K SE  +SK+ E+ E++
Sbjct: 1339 ESRLESSKIKTELVSERSANEIKISE-MQSKLNEFEEER 1376


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,140,173
Number of Sequences: 53049
Number of extensions: 232910
Number of successful extensions: 521
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1663799760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)