Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15f17
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68118-6|CAA92187.1|  311|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic in...    27   9.3  
AC024844-6|AAK29956.1|  442|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z68118-6|CAA92187.1|  311|Caenorhabditis elegans Hypothetical
           protein R01E6.6 protein.
          Length = 311

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 421 KDRMRSSKASKELVAKRTEQMKKFS 347
           KDR +SS+ SK +   RT+ M+K S
Sbjct: 69  KDRPKSSRESKNIEISRTKSMRKDS 93


>AF067608-8|AAC17647.1|  432|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.E protein.
          Length = 432

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 337 ESKIQEWNEQKPRRLXLRDYVDTXGLDTD 251
           E  +QEW   +   L LR Y+D    DT+
Sbjct: 176 EILLQEWEHARDDLLKLRAYIDANPFDTE 204


>AC024844-6|AAK29956.1|  442|Caenorhabditis elegans Hypothetical
           protein Y65B4A.1 protein.
          Length = 442

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 436 SQFECKDRMRSSKASKELVAKRTEQMKKFSEYRESKIQEWNEQKPR 299
           ++FE K     ++  ++L A    Q K++ E +++KI EW   KPR
Sbjct: 262 ARFEMKGDFDPARKRRKLTAA---QKKRYME-QQNKIFEWTPDKPR 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,829,931
Number of Sequences: 27780
Number of extensions: 120267
Number of successful extensions: 350
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)