Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15f14
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal pro...   204   3e-53
Z81070-7|CAD30437.1|  608|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z81070-6|CAB03000.1|  677|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    24   9.9  

>AF038611-9|AAB92041.2|  180|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 20 protein.
          Length = 180

 Score =  204 bits (498), Expect = 3e-53
 Identities = 93/176 (52%), Positives = 125/176 (71%), Gaps = 1/176 (0%)
 Frame = -3

Query: 526 KAKGQ-LREYEVIGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGE 350
           KA G+ L EY V+GRK+P+E EP  P++KM+IF+ + ++AKSRFWYF+  L++ KK  GE
Sbjct: 4   KALGETLNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGE 63

Query: 349 IVXXXXXXXXXXXXXKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRAR 170
           I+             KN+G+WL+Y+SR+G HNMYREYRD +V GAVTQCYRDMGARHRA+
Sbjct: 64  ILSIKQVFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQ 123

Query: 169 AHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPLPKRVHHYKRLNTFAYKRPSTYF 2
           A  I I+KV+ +KA   +R  +K FH++ IRFPLP RV   K L+ F   R +T+F
Sbjct: 124 ADRIHILKVQTVKAEDTKRAGIKMFHDAKIRFPLPHRVTKRKNLSVFTTARQNTHF 179


>Z81070-7|CAD30437.1|  608|Caenorhabditis elegans Hypothetical
           protein F26E4.7b protein.
          Length = 608

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 409 WRQLDPERKFSFY--TREVWARSPTGAYGR 492
           W+ L PE+ F+F+  T E W +  T    R
Sbjct: 451 WQVLTPEQNFTFFVPTNEAWHKQSTSLVAR 480


>Z81070-6|CAB03000.1|  677|Caenorhabditis elegans Hypothetical
           protein F26E4.7a protein.
          Length = 677

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +1

Query: 409 WRQLDPERKFSFY--TREVWARSPTGAYGR 492
           W+ L PE+ F+F+  T E W +  T    R
Sbjct: 520 WQVLTPEQNFTFFVPTNEAWHKQSTSLVAR 549


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 23.8 bits (49), Expect(2) = 9.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 226 HSGHGIHGTC 255
           H GHG HG+C
Sbjct: 285 HGGHGRHGSC 294



 Score = 21.4 bits (43), Expect(2) = 9.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 220 HLHSGHGIHGT 252
           H H GHG HG+
Sbjct: 253 HGHGGHGGHGS 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,972,866
Number of Sequences: 27780
Number of extensions: 270219
Number of successful extensions: 836
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)