Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15f12
(848 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 95 7e-20
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 77 2e-14
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 36 0.036
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 36 0.036
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 36 0.036
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 36 0.036
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 36 0.036
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 36 0.036
L10986-8|AAA28013.2| 286|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z69902-1|CAA93767.1| 689|Caenorhabditis elegans Hypothetical pr... 28 9.6
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 28 9.6
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 94.7 bits (225), Expect = 7e-20
Identities = 59/159 (37%), Positives = 85/159 (53%)
Frame = -2
Query: 793 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKL 614
+ KQI E+ AS YL+M YF D V P AK F + + EEREHAT+L+ +RG
Sbjct: 16 VNKQINIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRG-- 73
Query: 613 TGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLS 434
G V L + P N W + A E AL LE S+ ++ T + ND HL D++
Sbjct: 74 -GRVV-LQDIQKPENDEWGTALKAFEAALALEKFNNESLLKLHSTA-GNHNDAHLTDFIE 130
Query: 433 GEFLDEQYKGQRDLAGKASTLKKMMDKHAALGEFIFDKK 317
++LDEQ K + A + LK++ +GE++FDK+
Sbjct: 131 EKYLDEQVKSINEFARMVANLKRV---GPGVGEYVFDKE 166
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 77.0 bits (181), Expect = 2e-14
Identities = 52/159 (32%), Positives = 80/159 (50%)
Frame = -2
Query: 793 MRKQIQEEVAASIQYLAMGAYFSIDTVNRPGFAKLFFDAATEEREHATKLIDYLLMRGKL 614
+ KQI E+ AS YL+M A+F D + AK F + + EER HAT+L+ +RG
Sbjct: 16 VNKQINVELYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRG-- 73
Query: 613 TGSVTDLITYRAPANTSWESGASALEHALKLESDVTNSIREVIKTCESSFNDYHLVDYLS 434
G V + + P W + A E AL LE S+ ++ E ND HL +Y+
Sbjct: 74 -GRVA-MQNIQKPEKDEWGTVLEAFEAALALERANNASLLKLHGIAEQR-NDAHLTNYIQ 130
Query: 433 GEFLDEQYKGQRDLAGKASTLKKMMDKHAALGEFIFDKK 317
++L+EQ + A + +K+ LGE++FDK+
Sbjct: 131 EKYLEEQVHSINEFARHIANIKR---AGPGLGEYLFDKE 166
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 35.9 bits (79), Expect = 0.036
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -1
Query: 545 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 369
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 1949 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 2008
Query: 368 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 258
R P L Q ++ + ++ H+ + P
Sbjct: 2009 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 2046
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 35.9 bits (79), Expect = 0.036
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -1
Query: 545 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 369
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 1971 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 2030
Query: 368 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 258
R P L Q ++ + ++ H+ + P
Sbjct: 2031 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 2068
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
R11A8.7d protein.
Length = 1427
Score = 35.9 bits (79), Expect = 0.036
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -1
Query: 545 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 369
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 792 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 851
Query: 368 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 258
R P L Q ++ + ++ H+ + P
Sbjct: 852 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 889
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
R11A8.7c protein.
Length = 1405
Score = 35.9 bits (79), Expect = 0.036
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -1
Query: 545 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 369
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 770 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 829
Query: 368 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 258
R P L Q ++ + ++ H+ + P
Sbjct: 830 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 867
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 35.9 bits (79), Expect = 0.036
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -1
Query: 545 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 369
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 1949 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 2008
Query: 368 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 258
R P L Q ++ + ++ H+ + P
Sbjct: 2009 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 2046
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 35.9 bits (79), Expect = 0.036
Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = -1
Query: 545 SPRARPQAGE*RHQQHPGGHQD-LREQLQRLPPGRLFVRGIPRRTVQGPTRPRRQGLDPQ 369
SP+ PQ + Q QD E L R+ P FV +P ++ P+RP + LD
Sbjct: 1971 SPKQAPQIPSTQQQSKLQSRQDQASETLVRVAPAENFVAPVPASSIAAPSRPNQNVLDRV 2030
Query: 368 EDDGQTRRPRRVHLRQETPRIERI-NILHVTPPLRSNP 258
R P L Q ++ + ++ H+ + P
Sbjct: 2031 IAPSLRREPTTTPLIQPVHPVQSVQSVQHMQQQQLARP 2068
>L10986-8|AAA28013.2| 286|Caenorhabditis elegans Hypothetical
protein F10E9.2 protein.
Length = 286
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 449 GRLFVRGIPRRTVQGPTRPRRQGLDPQEDDGQTRRPRRV 333
G L G R ++G TR R+G + G+TRR ++V
Sbjct: 110 GELSNNGAERGKIRGSTRATRKGSVNKSKSGRTRRHKKV 148
>Z82076-6|CAH10809.1| 450|Caenorhabditis elegans Hypothetical
protein W07G1.5b protein.
Length = 450
Score = 28.3 bits (60), Expect = 7.3
Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 5/176 (2%)
Frame = -1
Query: 749 LSHGGLLLDRYGEPPRLREAILRCCD*RTRARDQAH*LPAHEGK-ADRLRNRPHHVQGPR 573
LSHG L Y ++ +I D + A +P G+ A+++ P P
Sbjct: 75 LSHGAKKL--YTTDGKIVNSIKELEDGKIYVAASAQFIPMRYGEFAEKVWKPPSRKHSP- 131
Query: 572 KHVVGERRI-SPRARPQAGE*RHQ-QHPGGHQDLREQLQRLPPGRLFVRGIPRRTVQGPT 399
++ RI + R R Q R Q Q+ G +QR R R P
Sbjct: 132 --IMSSDRIKTARTRSQDPSKRRQPQNSGSSAPTGSGVQRSRSVRTLAEDRKSRRDANPA 189
Query: 398 RPRRQGLD--PQEDDGQTRRPRRVHLRQETPRIERINILHVTPPLRSNPF*NVTSK 237
RP G P++ DG RP+ RQ P+ ++I T P V+ K
Sbjct: 190 RPNVNGASNAPKKFDG--ARPKAPPARQTIPKPKKILTTSTTNKKPPTPKRKVSKK 243
>Z82076-4|CAB04937.2| 438|Caenorhabditis elegans Hypothetical
protein W07G1.5a protein.
Length = 438
Score = 28.3 bits (60), Expect = 7.3
Identities = 44/176 (25%), Positives = 65/176 (36%), Gaps = 5/176 (2%)
Frame = -1
Query: 749 LSHGGLLLDRYGEPPRLREAILRCCD*RTRARDQAH*LPAHEGK-ADRLRNRPHHVQGPR 573
LSHG L Y ++ +I D + A +P G+ A+++ P P
Sbjct: 75 LSHGAKKL--YTTDGKIVNSIKELEDGKIYVAASAQFIPMRYGEFAEKVWKPPSRKHSP- 131
Query: 572 KHVVGERRI-SPRARPQAGE*RHQ-QHPGGHQDLREQLQRLPPGRLFVRGIPRRTVQGPT 399
++ RI + R R Q R Q Q+ G +QR R R P
Sbjct: 132 --IMSSDRIKTARTRSQDPSKRRQPQNSGSSAPTGSGVQRSRSVRTLAEDRKSRRDANPA 189
Query: 398 RPRRQGLD--PQEDDGQTRRPRRVHLRQETPRIERINILHVTPPLRSNPF*NVTSK 237
RP G P++ DG RP+ RQ P+ ++I T P V+ K
Sbjct: 190 RPNVNGASNAPKKFDG--ARPKAPPARQTIPKPKKILTTSTTNKKPPTPKRKVSKK 243
>Z69902-1|CAA93767.1| 689|Caenorhabditis elegans Hypothetical
protein C47D12.2 protein.
Length = 689
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 1 KHNMTLLINYAYHKVLFDA 57
+HN L+ N YH+ LFDA
Sbjct: 569 RHNSHLIYNLLYHRALFDA 587
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -1
Query: 434 RGIPRRTVQGPTRPRRQGLDPQEDDGQTRRPRRVHLRQETPRIERINILHVTPPLR 267
R PRRT + P+ PRR+ + PRR R +P R PP +
Sbjct: 105 RSPPRRTRRSPSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQQRSRSPPPAK 160
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,710,208
Number of Sequences: 27780
Number of extensions: 414695
Number of successful extensions: 1094
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1091
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -