Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15f11
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    40   3e-04
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    40   3e-04
SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    38   0.002
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    28   1.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   2.3  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    26   5.3  

>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
 Frame = -2

Query: 708 KXQRKDKGKTRIT-----AYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERY 544
           K  RKD   T  T     A++++ KE    LLK +P ++ S +SK +GEMW N +   R 
Sbjct: 91  KSLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRM 150

Query: 543 LWKRKAKRFAIQKEQ 499
            + + ++ +  Q ++
Sbjct: 151 RYFKMSEFYKAQHQK 165


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
 Frame = -2

Query: 708 KXQRKDKGKTRIT-----AYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERY 544
           K  RKD   T  T     A++++ KE    LLK +P ++ S +SK +GEMW N +   R 
Sbjct: 91  KSLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRNESKEVRM 150

Query: 543 LWKRKAKRFAIQKEQ 499
            + + ++ +  Q ++
Sbjct: 151 RYFKMSEFYKAQHQK 165


>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
 Frame = -2

Query: 711 AKXQRK---DKGKTRITAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYL 541
           AK  RK   +  K  ++A+M ++ E R ++   +PD  F  +   LG+ W  +   ER  
Sbjct: 5   AKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREP 64

Query: 540 WKRKAKRFAIQKEQNNQVINKIISN 466
           ++ KA++   + E+  +  +  ++N
Sbjct: 65  YEEKARQDKERYERERKEYDTKLAN 89


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 777 LYMMEKNSKKKLIVKDGRVIGRAKXQRKDK 688
           LY+M KN K+K   KD +     K Q+K+K
Sbjct: 24  LYLMNKNKKRKPEKKDDKEKSSKKVQKKNK 53


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -2

Query: 618  PDMDFSAIS-KRLGEMWSNVNYNERY 544
            PDM+ S +  KRL + W+ +  NE+Y
Sbjct: 1412 PDMEKSKVEHKRLAQEWAGLEVNEKY 1437


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
 Frame = -2

Query: 717 GRAKXQRKDKGKTRITAYMMWAK--EARNELLKKHPDM-DFSAISKRLGEMWSNVNYNER 547
           GR   +R++K + +    ++ AK  + +N+     P   D + +   +G +  +    ER
Sbjct: 452 GRLASERENKIRLKALRELL-AKLPKPKNDYELMEPRFADETDVEATVGVLEEDATDRER 510

Query: 546 YLWKRKAKRFAIQKEQNNQVINKIISNPSV 457
            + +R A++  + K + +QVI + +  PSV
Sbjct: 511 RIQERIAEKERLAKARRSQVIQRDLIRPSV 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,312
Number of Sequences: 5004
Number of extensions: 33355
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)