Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15f11
(787 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 48 8e-06
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 48 8e-06
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 48 8e-06
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 48 8e-06
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 48 8e-06
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 44 1e-04
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 43 3e-04
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 41 9e-04
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 39 0.005
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 39 0.005
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 39 0.005
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 38 0.006
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 38 0.006
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 38 0.006
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 38 0.006
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 38 0.006
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 38 0.008
U97193-6|AAV34803.1| 780|Caenorhabditis elegans Hypothetical pr... 34 0.13
U97193-5|AAV34804.1| 783|Caenorhabditis elegans Hypothetical pr... 34 0.13
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p... 31 0.71
Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical pr... 29 2.9
U97404-2|AAB93309.1| 795|Caenorhabditis elegans Acid-sensing/am... 28 8.7
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 48.0 bits (109), Expect = 8e-06
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = -2
Query: 684 KTRITAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKRFA-IQ 508
K + A+M+WA++ R ++LK +PDM S ISK LG W ++ +E+ + + R + +
Sbjct: 179 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLH 238
Query: 507 KEQN 496
EQ+
Sbjct: 239 MEQH 242
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 48.0 bits (109), Expect = 8e-06
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = -2
Query: 684 KTRITAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKRFA-IQ 508
K + A+M+WA++ R ++LK +PDM S ISK LG W ++ +E+ + + R + +
Sbjct: 176 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLH 235
Query: 507 KEQN 496
EQ+
Sbjct: 236 MEQH 239
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 48.0 bits (109), Expect = 8e-06
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = -2
Query: 684 KTRITAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKRFA-IQ 508
K + A+M+WA++ R ++LK +PDM S ISK LG W ++ +E+ + + R + +
Sbjct: 282 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLH 341
Query: 507 KEQN 496
EQ+
Sbjct: 342 MEQH 345
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 48.0 bits (109), Expect = 8e-06
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = -2
Query: 684 KTRITAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKRFA-IQ 508
K + A+M+WA++ R ++LK +PDM S ISK LG W ++ +E+ + + R + +
Sbjct: 330 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLH 389
Query: 507 KEQN 496
EQ+
Sbjct: 390 MEQH 393
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 48.0 bits (109), Expect = 8e-06
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Frame = -2
Query: 684 KTRITAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKRFA-IQ 508
K + A+M+WA++ R ++LK +PDM S ISK LG W ++ +E+ + + R + +
Sbjct: 330 KRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLSKLH 389
Query: 507 KEQN 496
EQ+
Sbjct: 390 MEQH 393
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/66 (31%), Positives = 38/66 (57%)
Frame = -2
Query: 717 GRAKXQRKDKGKTRITAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLW 538
G+ + D+ K + A+M+W++ R ++ ++P M S ISKRLG W ++ E+ +
Sbjct: 50 GKDGKKNDDRVKRPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQEKRPF 109
Query: 537 KRKAKR 520
+AKR
Sbjct: 110 IDEAKR 115
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/58 (34%), Positives = 34/58 (58%)
Frame = -2
Query: 693 DKGKTRITAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKR 520
D K + A+M+W++ R ++ + +P M S ISKRLG W ++ E+ + +AKR
Sbjct: 46 DHVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQEKRPFIDEAKR 103
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 41.1 bits (92), Expect = 9e-04
Identities = 17/58 (29%), Positives = 34/58 (58%)
Frame = -2
Query: 684 KTRITAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKRFAI 511
K + A+M+W++ R ++ + PDM + ISK+LG W ++ E+ + +A+R +
Sbjct: 94 KRPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEKAPFVAEAERLRV 151
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 38.7 bits (86), Expect = 0.005
Identities = 13/62 (20%), Positives = 37/62 (59%)
Frame = -2
Query: 672 TAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKRFAIQKEQNN 493
+ Y++++ E R ++ ++PD F +SK +G W ++ ++ ++ +A+ A++K + +
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEVVAVEKAKQD 1513
Query: 492 QV 487
+
Sbjct: 1514 AI 1515
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 38.7 bits (86), Expect = 0.005
Identities = 13/62 (20%), Positives = 37/62 (59%)
Frame = -2
Query: 672 TAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKRFAIQKEQNN 493
+ Y++++ E R ++ ++PD F +SK +G W ++ ++ ++ +A+ A++K + +
Sbjct: 1454 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEVVAVEKAKQD 1513
Query: 492 QV 487
+
Sbjct: 1514 AI 1515
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 38.7 bits (86), Expect = 0.005
Identities = 13/62 (20%), Positives = 37/62 (59%)
Frame = -2
Query: 672 TAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKRFAIQKEQNN 493
+ Y++++ E R ++ ++PD F +SK +G W ++ ++ ++ +A+ A++K + +
Sbjct: 84 SGYILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEVVAVEKAKQD 143
Query: 492 QV 487
+
Sbjct: 144 AI 145
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = -2
Query: 714 RAKXQRKDKG--KTRITAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYL 541
+ K +KD K ++A+ ++++ R E+ HPD +++ LG+MW V + +
Sbjct: 123 KRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDM 182
Query: 540 WKRKAK 523
+++KA+
Sbjct: 183 YEQKAQ 188
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = -2
Query: 714 RAKXQRKDKG--KTRITAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYL 541
+ K +KD K ++A+ ++++ R E+ HPD +++ LG+MW V + +
Sbjct: 122 KRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDM 181
Query: 540 WKRKAK 523
+++KA+
Sbjct: 182 YEQKAQ 187
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = -2
Query: 714 RAKXQRKDKG--KTRITAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYL 541
+ K +KD K ++A+ ++++ R E+ HPD +++ LG+MW V + +
Sbjct: 124 KRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDM 183
Query: 540 WKRKAK 523
+++KA+
Sbjct: 184 YEQKAQ 189
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 38.3 bits (85), Expect = 0.006
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Frame = -2
Query: 753 KKKLIVKDGRVIGRAKXQRKDKG----KTRITAYMMWAKEARNELLKKHPDMDFSAISKR 586
K+K K+ R K +KDK K +AYM W +RNEL K + ++K+
Sbjct: 530 KEKREKKEKREKKEGKKGKKDKDPNAPKRATSAYMQWFLASRNEL--KEDGDSVADVAKK 587
Query: 585 LGEMWSNVNYNERYLWKRKAK 523
G W ++ +++ W+ KA+
Sbjct: 588 GGAKWKTMSSDDKKKWEEKAE 608
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = -2
Query: 714 RAKXQRKDKG--KTRITAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYL 541
+ K +KD K ++A+ ++++ R E+ HPD +++ LG+MW V + +
Sbjct: 124 KRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDM 183
Query: 540 WKRKAK 523
+++KA+
Sbjct: 184 YEQKAQ 189
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 37.9 bits (84), Expect = 0.008
Identities = 21/79 (26%), Positives = 38/79 (48%)
Frame = -2
Query: 762 KNSKKKLIVKDGRVIGRAKXQRKDKGKTRITAYMMWAKEARNELLKKHPDMDFSAISKRL 583
K KK+ VK+ V K + ++ K TAY++W RN + K ++K+
Sbjct: 536 KREKKEKPVKEKAVKKGKKTKDPNEPKRATTAYIIWFNANRNSM--KEDGDTLGDVAKKA 593
Query: 582 GEMWSNVNYNERYLWKRKA 526
G W +++ +++ W KA
Sbjct: 594 GAKWKSMSADDKKEWNDKA 612
>U97193-6|AAV34803.1| 780|Caenorhabditis elegans Hypothetical
protein C06A5.3a protein.
Length = 780
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -2
Query: 327 RVTGCAPVDVAAHLRLLGESLAIIGARLKEHEGQIAVSGSVSVLLDTLVCALGPLAA 157
R G P D AA R++ ++ + G V+GS+ +L+D+L+ ++GPL A
Sbjct: 696 REFGTTPADSAAAFRMMAHAVRSAAVTRADEVG--TVNGSLDLLMDSLLGSIGPLLA 750
>U97193-5|AAV34804.1| 783|Caenorhabditis elegans Hypothetical
protein C06A5.3b protein.
Length = 783
Score = 33.9 bits (74), Expect = 0.13
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = -2
Query: 327 RVTGCAPVDVAAHLRLLGESLAIIGARLKEHEGQIAVSGSVSVLLDTLVCALGPLAA 157
R G P D AA R++ ++ + G V+GS+ +L+D+L+ ++GPL A
Sbjct: 699 REFGTTPADSAAAFRMMAHAVRSAAVTRADEVG--TVNGSLDLLMDSLLGSIGPLLA 753
>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical protein
T22H6.6a protein.
Length = 1405
Score = 31.5 bits (68), Expect = 0.71
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Frame = -2
Query: 765 EKNSKKKLIVKDGRVIGRAKXQRKDKGKTR-------ITAYMMWAKEARNELLKKHPDMD 607
E++S K ++ V AK +R+ K + A+M+++K R + +++P+ D
Sbjct: 810 EQSSVKDVMDVKPEVFQSAKERRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKD 869
Query: 606 FSAISKRLGEMWSNVNYNER 547
+SK LGE W ++ +++
Sbjct: 870 NRTVSKILGEWWYSLAADQK 889
>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
protein T22H6.6a protein.
Length = 1405
Score = 31.5 bits (68), Expect = 0.71
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Frame = -2
Query: 765 EKNSKKKLIVKDGRVIGRAKXQRKDKGKTR-------ITAYMMWAKEARNELLKKHPDMD 607
E++S K ++ V AK +R+ K + A+M+++K R + +++P+ D
Sbjct: 810 EQSSVKDVMDVKPEVFQSAKERRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKD 869
Query: 606 FSAISKRLGEMWSNVNYNER 547
+SK LGE W ++ +++
Sbjct: 870 NRTVSKILGEWWYSLAADQK 889
>Z50797-9|CAL36516.1| 640|Caenorhabditis elegans Hypothetical
protein T22H6.6b protein.
Length = 640
Score = 31.5 bits (68), Expect = 0.71
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Frame = -2
Query: 765 EKNSKKKLIVKDGRVIGRAKXQRKDKGKTR-------ITAYMMWAKEARNELLKKHPDMD 607
E++S K ++ V AK +R+ K + A+M+++K R + +++P+ D
Sbjct: 45 EQSSVKDVMDVKPEVFQSAKERRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKD 104
Query: 606 FSAISKRLGEMWSNVNYNER 547
+SK LGE W ++ +++
Sbjct: 105 NRTVSKILGEWWYSLAADQK 124
>Z99171-6|CAB16309.2| 128|Caenorhabditis elegans Hypothetical
protein F47G4.6 protein.
Length = 128
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/64 (21%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = -2
Query: 702 QRKDKGKTRI---TAYMMWAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKR 532
Q D+ K +I +AY ++ +E ++ + P F IS+++ W ++ E+ +K+
Sbjct: 41 QEMDQKKKKIRSTSAYALFFRERQSLEKRAAPYATFGQISQKIARQWDSLTEEEKKAYKQ 100
Query: 531 KAKR 520
+ ++
Sbjct: 101 RCEK 104
>U97404-2|AAB93309.1| 795|Caenorhabditis elegans
Acid-sensing/amiloride-sensitiveion channel family
protein 1 protein.
Length = 795
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -1
Query: 529 SQEIRHTEGAKQSSYQQNHIQSECEAGEPRAGP 431
+Q+ +TEG ++S Q+ H+ C G+PR P
Sbjct: 588 TQKAYNTEGCQRSCIQK-HLSKTCGCGDPRFPP 619
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,616,024
Number of Sequences: 27780
Number of extensions: 189039
Number of successful extensions: 652
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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