Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15f10
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine trans...    27   2.5  
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    27   2.5  

>SPBC839.11c |hut1||uridine diphosphate-N-acetylglucosamine
           transporter Hut1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 322

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
 Frame = -3

Query: 470 LLFID*FSVVIKVVDMKIF*CSGCV--IFAVHVIYQNGKLKL-NI*L-KDTDISLLQVAS 303
           L FI+    ++K  DM +F C+G V  +F    + + G + L  I L +     LL V  
Sbjct: 225 LSFINRHPSILK--DMLLFACTGSVGQLFIFFTLEKFGSITLVTITLTRKIFTMLLSVFH 282

Query: 302 FILVLQELYARHLLYIFIGYSRDTSINILNS 210
           F   +  +    +L +F+G S +  + ILN+
Sbjct: 283 FHHTVSSIQWLGILLVFLGISLEAGLKILNN 313


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 5   LAGKYRIHYCNRIKINKTMSA*NATCKLHWT 97
           LAG + +HY NR  ++  + A   +  +HWT
Sbjct: 93  LAGMFLVHYANRALVSPLLMAPQVS-PMHWT 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,619
Number of Sequences: 5004
Number of extensions: 60310
Number of successful extensions: 104
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)