Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15f10
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0392 + 17500748-17500877,17501006-17501280,17501321-175013...    29   6.2  

>10_08_0392 +
           17500748-17500877,17501006-17501280,17501321-17501388,
           17501516-17501632,17501802-17501943,17502622-17502912,
           17503507-17503650
          Length = 388

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = -2

Query: 708 FSYDYSFPSLLAPLRPHCTKLHYVNFS*TLFKGTESSSAYKKLHKYLTCNGIFFFYLL 535
           F++ Y+F  ++A +   C+    VNFS  L  GT S   Y+ L    TC  + F Y+L
Sbjct: 235 FAFTYTF-QVVAFIVLSCSIAVCVNFSTFLVIGTTSPVTYQVLGHLKTCLILSFGYVL 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,122,931
Number of Sequences: 37544
Number of extensions: 297480
Number of successful extensions: 488
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)