Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15f09
         (345 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82264-8|CAB05153.1|  706|Caenorhabditis elegans Hypothetical pr...    29   1.2  
AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical...    28   2.1  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr...    27   4.8  
Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical...    26   6.3  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    26   6.3  
Z81073-9|CAB03030.2|  583|Caenorhabditis elegans Hypothetical pr...    26   8.3  
Z79752-7|CAC70084.1|  583|Caenorhabditis elegans Hypothetical pr...    26   8.3  
Z78063-5|CAB01501.1|  228|Caenorhabditis elegans Hypothetical pr...    26   8.3  
U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of ce...    26   8.3  
AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical ...    26   8.3  
AC199241-1|ABO33279.1|  343|Caenorhabditis elegans Hypothetical ...    26   8.3  

>Z82264-8|CAB05153.1|  706|Caenorhabditis elegans Hypothetical
           protein C49C3.1 protein.
          Length = 706

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 198 LGPDDWGSAFCPSGWTVASRELC 266
           LG  DW   F P+ W  A ++LC
Sbjct: 318 LGNPDWSKVFMPATWGEALKQLC 340


>AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical
           protein W10G11.14 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
 Frame = +3

Query: 216 GSAF--CPSGWTVASRELCSGEMELGCDPGW 302
           GS F  CP+ W            + GC+PGW
Sbjct: 14  GSTFADCPAAWKTILNSQYKESEDNGCEPGW 44


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
            C27F2.8 protein.
          Length = 1715

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -3

Query: 220  EPQSSGPNFVKFATKVANL----SKLGPPKPTPTTSEAPKD 110
            E  ++GP F  F+    NL    S   PP   P+TS+ P+D
Sbjct: 1665 ESSATGPMFTMFSGPEFNLWSSSSLFHPPTQQPSTSQMPQD 1705


>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical protein
            C09H6.1b protein.
          Length = 1309

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 166  LSKLGPPKPTPTTSEAPKDKM 104
            LSK G  KPTP+TS A  +K+
Sbjct: 963  LSKNGSGKPTPSTSSANLEKL 983


>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical protein
            C09H6.1a protein.
          Length = 1311

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -3

Query: 166  LSKLGPPKPTPTTSEAPKDKM 104
            LSK G  KPTP+TS A  +K+
Sbjct: 963  LSKNGSGKPTPSTSSANLEKL 983


>Z75955-6|CAB00120.1|  451|Caenorhabditis elegans Hypothetical
           protein R07B7.11 protein.
          Length = 451

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +1

Query: 148 VGQAWKGWPPLSQISQSWAPMIGALPSVHRVGLWHRENFVPGRWNSAATLV-GSPSVCL 321
           +G+    W     I+ SW  +I  +    ++   H     PG+W+    LV G+  + L
Sbjct: 203 IGKYCNTWRNFDDINSSWKSIISIISYYDKMQDKHIPTHGPGKWHDPDMLVIGNKGITL 261


>AL132952-10|CAB63384.1|  591|Caenorhabditis elegans Hypothetical
           protein Y51H4A.13 protein.
          Length = 591

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 256 LDATVQPDGQKAEPQSSGPNFVKFATKVANLSKLGPPKPTPTTSEAPKDKMDF 98
           L   V+   Q+++    G  F      VA   +  PP PTP T E  +D +DF
Sbjct: 465 LSLLVEKCMQESDEAGDGGEFSDVWACVAEEIRAQPPTPTP-TPELVEDLIDF 516


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +1

Query: 154 QAWKGWPPLSQISQSWAPMIGALPSV-HRVGLWHRENFVPGRWNSAATLVGSP 309
           QA  G+PP       +AP  G  P + H+     ++   PG W+      G P
Sbjct: 205 QASTGYPPPPSQQSPYAPQAGPPPQMRHQYPPHSQQQAPPGYWDGYQGYGGPP 257


>Z81073-9|CAB03030.2|  583|Caenorhabditis elegans Hypothetical
           protein F30F8.2 protein.
          Length = 583

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 168 LATFVANFTKLGPDDWGSAFC 230
           LAT++   +++ PD W  + C
Sbjct: 176 LATYIPQLSRVAPDSWAMSVC 196


>Z79752-7|CAC70084.1|  583|Caenorhabditis elegans Hypothetical
           protein F30F8.2 protein.
          Length = 583

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 168 LATFVANFTKLGPDDWGSAFC 230
           LAT++   +++ PD W  + C
Sbjct: 176 LATYIPQLSRVAPDSWAMSVC 196


>Z78063-5|CAB01501.1|  228|Caenorhabditis elegans Hypothetical
           protein F45D3.4a protein.
          Length = 228

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 199 NFVKFATKVANLSKLGPPKPTPTTSEAPKDKMD 101
           NF  F   V  L+     KPT TT+E P D  D
Sbjct: 2   NFSLFFATVL-LTAFAASKPTTTTTEKPDDSFD 33


>U29488-6|AAA68776.1|  161|Caenorhabditis elegans Inhibitor of cell
           death protein 1 protein.
          Length = 161

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +3

Query: 144 LGGPSLERLATFVANFTKLGPDDWG 218
           LG  SL  L     N TKLGPD  G
Sbjct: 112 LGPESLTHLKKLANNVTKLGPDGKG 136


>AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical
           protein Y48C3A.12 protein.
          Length = 675

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/11 (81%), Positives = 11/11 (100%)
 Frame = -3

Query: 151 PPKPTPTTSEA 119
           PPKP+PTTSE+
Sbjct: 642 PPKPSPTTSES 652


>AC199241-1|ABO33279.1|  343|Caenorhabditis elegans Hypothetical
           protein 2RSSE.1 protein.
          Length = 343

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 187 FATKVANLSKLGPPKPTPTTSEAPK 113
           ++    +L++   P+PTPTTS+ P+
Sbjct: 273 YSLAAIHLAEEASPEPTPTTSKPPR 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,652,001
Number of Sequences: 27780
Number of extensions: 198146
Number of successful extensions: 748
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)