Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15f07
(873 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 240 2e-64
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 157 2e-39
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 146 5e-36
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 141 1e-34
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 122 9e-29
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 121 2e-28
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 117 2e-27
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 117 3e-27
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 114 2e-26
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 111 1e-25
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 107 2e-24
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 103 3e-23
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 98 1e-21
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 96 7e-21
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 88 1e-18
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 84 2e-17
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 76 6e-15
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 73 4e-14
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 73 5e-14
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 66 8e-12
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 64 3e-11
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 60 4e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 59 9e-10
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 58 1e-09
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 50 6e-07
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 48 2e-06
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 48 2e-06
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 44 2e-05
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 42 2e-04
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 34 0.030
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 32 0.093
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 30 0.37
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 30 0.37
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 29 0.86
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 28 1.5
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 28 2.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 2.0
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 27 3.5
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 27 4.6
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 27 4.6
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz... 27 4.6
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 6.1
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 26 8.1
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 240 bits (587), Expect = 2e-64
Identities = 118/226 (52%), Positives = 163/226 (72%), Gaps = 2/226 (0%)
Frame = -3
Query: 862 PDSDAAEDASVLLANYNTKKKYRQTVMFTATMPPAVERLARSYLRRPAIVYIGSVGKPVD 683
P S+A+E +LA N+ RQT+MF+AT+PP V LA+SYL P ++ IG++G+ VD
Sbjct: 428 PSSNASEKDGSILATANSSSSRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVD 487
Query: 682 RTEQIVYMIGENEKR-RKLTEILQRG-VEPPIIIFVNQKKGADVLAKGLEKLGFNACTLH 509
R EQ V MI ++ K+ R++ EIL+ PPIIIFVN K+ + +AK L +G++A TLH
Sbjct: 488 RVEQRVEMISDDSKKWRRVEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLH 547
Query: 508 GGKGQEQRDFALASLKGGAKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRT 329
G K QEQR+ A+ L+ DILVATD+AGRGIDI +VS+V+NY+MAK+IEDYTHRIGRT
Sbjct: 548 GSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRT 607
Query: 328 GRAGKTGKAMSFVTKEDSALFYDLKQVLLASSVSTCPPELMNHPEA 191
GRAGK+G A++F+ ED+ ++YDL+ +L S+ + P EL NH A
Sbjct: 608 GRAGKSGTAITFLGPEDTDVYYDLRVLLSRSAKAHIPDELRNHEAA 653
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 157 bits (381), Expect = 2e-39
Identities = 80/206 (38%), Positives = 119/206 (57%), Gaps = 4/206 (1%)
Frame = -3
Query: 814 NTKKKYRQTVMFTATMPPAVERLARSYLRRPAIVYIGSVGKPVDRTEQIVYMIGENEKRR 635
N + RQTV+F+AT P A+E LAR L++P + +G EQIV + E K
Sbjct: 594 NNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFS 653
Query: 634 KLTEIL----QRGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALAS 467
+L E+L ++ ++FV++++ AD L L K G+ + ++HGGK Q RD ++
Sbjct: 654 RLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISD 713
Query: 466 LKGGAKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVT 287
K G D+L+AT V RG+D+K + +V+NYD +EDY HR+GRTGRAG TG A++F+T
Sbjct: 714 YKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFIT 773
Query: 286 KEDSALFYDLKQVLLASSVSTCPPEL 209
E D+ + L S P EL
Sbjct: 774 PEQEKYAVDIAKALKMSK-QPVPKEL 798
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 146 bits (353), Expect = 5e-36
Identities = 81/203 (39%), Positives = 119/203 (58%), Gaps = 1/203 (0%)
Frame = -3
Query: 811 TKKKYRQTVMFTATMPPAVERLARSYLRRPAIVYIGSVGKPVDRTEQIVYMIGENEKRRK 632
T + RQT+MF+AT P ++ LAR +L+ + +G VG + Q V + ++EKR
Sbjct: 360 TSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVGRVGSTSENITQKVVHVEDSEKRSY 419
Query: 631 LTEILQR-GVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGG 455
L +IL E +IFV K+ AD L L F A ++HG + Q +R+ AL + G
Sbjct: 420 LLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQRERERALELFRSG 479
Query: 454 AKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDS 275
I+VAT VA RG+DI +V+ VINYD+ I+DY HRIGRTGRAG TG+A++F + +
Sbjct: 480 RTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGQAVAFFNRNNK 539
Query: 274 ALFYDLKQVLLASSVSTCPPELM 206
+ +L + LL + CP L+
Sbjct: 540 GIAKELIE-LLQEANQECPSFLI 561
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 141 bits (341), Expect = 1e-34
Identities = 75/188 (39%), Positives = 112/188 (59%), Gaps = 4/188 (2%)
Frame = -3
Query: 796 RQTVMFTATMPPAVERLARSYLRRPAIVYIGSVGKPVDRT-EQIVYMIGENEKRRKLTEI 620
RQTVMF+AT P V+RLAR YL V +GS+ +QIV ++ +KR +L +
Sbjct: 301 RQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKD 360
Query: 619 LQRGVEP---PIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAK 449
++ ++ ++IF K+ AD + + L + G+ A +HG K Q++RD+ L + G
Sbjct: 361 IEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKS 420
Query: 448 DILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSAL 269
I+VATDVA RGID+K ++ V NYD EDY HRIGRTGRAG G A ++ T +++
Sbjct: 421 PIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQ 480
Query: 268 FYDLKQVL 245
+L +L
Sbjct: 481 ARELVSIL 488
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 122 bits (293), Expect = 9e-29
Identities = 79/196 (40%), Positives = 106/196 (54%), Gaps = 7/196 (3%)
Frame = -3
Query: 811 TKKKYRQTVMFTATMPPAVERLARSYLRRPAIVYIGSVGKPVDRT-EQIVYMIGE-NEKR 638
T+ RQTV F+AT P +V LA ++L+ P + IGS + QIV ++ + K
Sbjct: 341 TRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKE 400
Query: 637 RKLTEILQR-----GVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFAL 473
R L +L++ G + I+IFV KK A +G +N +HG Q R AL
Sbjct: 401 RMLDNLLRKHLSSGGKDDKILIFVLYKKEA-ARVEGTLARKYNVVGIHGDMSQGARLQAL 459
Query: 472 ASLKGGAKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSF 293
K G +LVATDVA RG+DI V +VIN TIEDY HRIGRTGRA G A++F
Sbjct: 460 NDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITF 519
Query: 292 VTKEDSALFYDLKQVL 245
T +D + +L VL
Sbjct: 520 FTPQDKSHAGELVNVL 535
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 121 bits (291), Expect = 2e-28
Identities = 72/184 (39%), Positives = 97/184 (52%)
Frame = -3
Query: 796 RQTVMFTATMPPAVERLARSYLRRPAIVYIGSVGKPVDRTEQIVYMIGENEKRRKLTEIL 617
R+T++F+ATM VE+L R+ L +P V + S VD Q K L ++
Sbjct: 221 RRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYLVYLV 280
Query: 616 QRGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILV 437
IIIF LA L LGF+A LHG Q R AL K GA+ LV
Sbjct: 281 NELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLV 340
Query: 436 ATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDL 257
ATDVA RG+DI V +VINYD+ + Y HR+GRT RAG+ GK+++ VT+ D F +
Sbjct: 341 ATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQYDLEPFLRI 400
Query: 256 KQVL 245
+ +
Sbjct: 401 EATI 404
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 117 bits (282), Expect = 2e-27
Identities = 64/197 (32%), Positives = 106/197 (53%), Gaps = 1/197 (0%)
Frame = -3
Query: 796 RQTVMFTATMPPAVERLARSYLRRPAIVYIGSVGK-PVDRTEQIVYMIGENEKRRKLTEI 620
+Q +MF+AT+ + + + +++ P +Y+ K + +Q + E K RK+ ++
Sbjct: 230 KQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYVKLEEKAKNRKINDL 289
Query: 619 LQRGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDIL 440
L ++IFV A+ L + L + F + +HGG QE+R + K K I
Sbjct: 290 LDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRIC 349
Query: 439 VATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYD 260
VATDV GRGIDI+ V++VINYDM + + Y HR+GR GR G G A++F + E+ + D
Sbjct: 350 VATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILD 409
Query: 259 LKQVLLASSVSTCPPEL 209
Q +++ P E+
Sbjct: 410 KIQERFEVNITELPDEI 426
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 117 bits (281), Expect = 3e-27
Identities = 74/214 (34%), Positives = 114/214 (53%), Gaps = 2/214 (0%)
Frame = -3
Query: 784 MFTATMPPAVERLARSYLRRPAIVYIGSVGKPVDRTEQIVYMIG-ENEKRRKLTEILQRG 608
+F+AT+P VE LA+ P + +G D +Q + +G + K L +++ G
Sbjct: 226 LFSATIPSRVEELAKVVTVDPIRIIVGLKDAATDSIDQRLLFVGSDTSKIVILRQMISNG 285
Query: 607 -VEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILVAT 431
++P ++IFV + A L L + +HG Q +R+ ALA + G +L+AT
Sbjct: 286 ELKPRVVIFVQDIERAKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIAT 345
Query: 430 DVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQ 251
D+ RGID V MVIN+D +++ Y HRIGRTGRAG TG+A++F TKED +
Sbjct: 346 DLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAG 405
Query: 250 VLLASSVSTCPPELMNHPEAQHKPGTVVTKKRRE 149
V+ +S C E+ N A KP + KK ++
Sbjct: 406 VMRSSG---C--EVPNWVMALPKPSKEMKKKLKK 434
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 114 bits (274), Expect = 2e-26
Identities = 58/182 (31%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Frame = -3
Query: 793 QTVMFTATMPPAVERLARSYLRRPAIVYIGSVGKPVDRTEQIVYMIGENE-KRRKLTEIL 617
Q V+ +ATMP V + ++R P + + ++ +Q + + E K L ++
Sbjct: 194 QVVLLSATMPQDVLEVTTKFMRDPIRILVKKDELTLEGIKQFYVAVEKEEWKLDTLCDLY 253
Query: 616 QRGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILV 437
+ +IF N ++ D L + L + F ++HG Q QRD + + G+ IL+
Sbjct: 254 ETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILI 313
Query: 436 ATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDL 257
TD+ RGID++ VS+VINYD+ E+Y HRIGR GR G+ G +++FVT +D + ++
Sbjct: 314 TTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGVSINFVTNDDVRMMREI 373
Query: 256 KQ 251
+Q
Sbjct: 374 EQ 375
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 111 bits (267), Expect = 1e-25
Identities = 56/182 (30%), Positives = 97/182 (53%), Gaps = 1/182 (0%)
Frame = -3
Query: 793 QTVMFTATMPPAVERLARSYLRRPAIVYIGSVGKPVDRTEQIVYMIGENE-KRRKLTEIL 617
Q V+ +AT+P V + + P + + ++ +Q + + E K L ++
Sbjct: 196 QVVVVSATLPQDVLEMTNKFTTNPVRILVKRDELTLEGLKQYFIAVEKEEWKFDTLCDLY 255
Query: 616 QRGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILV 437
+IF N ++ D L + + + F ++HG Q++RD + + G +L+
Sbjct: 256 DTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLI 315
Query: 436 ATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDL 257
TD+ RGID++ VS+VINYD+ E+Y HRIGR+GR G+ G A++FVT ED + D+
Sbjct: 316 CTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGVAINFVTNEDVRILRDI 375
Query: 256 KQ 251
+Q
Sbjct: 376 EQ 377
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 107 bits (258), Expect = 2e-24
Identities = 67/178 (37%), Positives = 95/178 (53%), Gaps = 3/178 (1%)
Frame = -3
Query: 802 KYRQTVMFTATMPPAVERLARSYLRRPAIVYIGSVGKPVDR-TEQIVYMIGENEKRRK-- 632
K RQT++F+ATM V+ L R L RP V++ + T++ V + + E R
Sbjct: 435 KSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAM 494
Query: 631 LTEILQRGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGA 452
L + + IIF K A + L NA +HG QEQR AL + G
Sbjct: 495 LIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLSLNATEIHGSLSQEQRVRALEDFRDGK 554
Query: 451 KDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKED 278
+ L+ATDVA RGIDIK + +VINY+ T E Y HR+GRT RAG++G+A++ + D
Sbjct: 555 CNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEGD 612
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 103 bits (248), Expect = 3e-23
Identities = 65/188 (34%), Positives = 104/188 (55%), Gaps = 7/188 (3%)
Frame = -3
Query: 796 RQTVMFTATMPPAVERLA---RSYLRRPAIVY-IGSVGKPVDRTEQIVYMIGENEKRRK- 632
RQT++FTAT+ A+ +L + + P +Y + + V T Q Y+ ++ R
Sbjct: 187 RQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAY 246
Query: 631 LTEILQ--RGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKG 458
L +L + IIFVN+ + A+++ L L LH Q +R +L +
Sbjct: 247 LVHLLTIPENAKKSAIIFVNRTRTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRA 306
Query: 457 GAKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKED 278
A ILVATDVA RG+DI V +VIN+D+ + +DY HR+GRT RAG++G+++S VT+ D
Sbjct: 307 EAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGRTARAGRSGESISIVTERD 366
Query: 277 SALFYDLK 254
L + ++
Sbjct: 367 VDLVHAIE 374
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 98.3 bits (234), Expect = 1e-21
Identities = 63/208 (30%), Positives = 105/208 (50%), Gaps = 5/208 (2%)
Frame = -3
Query: 796 RQTVMFTATMPPAVERLARSYLRRPAIVYIG-SVGKPVDRTEQIV--YMIGENEKRRKLT 626
RQT++F+AT VE LAR L+ P +Y+ GKP E + Y++ +++KR L
Sbjct: 269 RQTLLFSATQTTKVEDLARISLK-PGPLYVNVDSGKPTSTVEGLEQGYVVVDSDKRFLLL 327
Query: 625 -EILQRGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAK 449
L+R ++ +I+F++ +A+ L + LHG + Q++R K
Sbjct: 328 FSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEK 387
Query: 448 DILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGK-TGKAMSFVTKEDSA 272
IL+ T+VA RG+DI V ++ YD DY HR+GRT R K TGK++ F+ +
Sbjct: 388 GILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVGRTARGTKGTGKSLMFLAPSELG 447
Query: 271 LFYDLKQVLLASSVSTCPPELMNHPEAQ 188
LK ++ + P + + ++Q
Sbjct: 448 FLRYLKTAKVSLNEFEFPANKVANVQSQ 475
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 95.9 bits (228), Expect = 7e-21
Identities = 59/198 (29%), Positives = 97/198 (48%)
Frame = -3
Query: 802 KYRQTVMFTATMPPAVERLARSYLRRPAIVYIGSVGKPVDRTEQIVYMIGENEKRRKLTE 623
K RQ +++AT P V+ +L +P + + + Q + E++K L
Sbjct: 216 KNRQISLYSATFPLIVKNFMDKHLNKPYEINLMDE-LTLRGVTQYYAFVDESQKVHCLNT 274
Query: 622 ILQRGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDI 443
+ + IIF N ++LAK + +LG++ H Q R+ + + G
Sbjct: 275 LFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRN 334
Query: 442 LVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFY 263
LV +D+ RGIDI+ V++VIN+D K E Y HRIGR+GR G G A+SF++ D Y
Sbjct: 335 LVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGLAISFISWADRFNLY 394
Query: 262 DLKQVLLASSVSTCPPEL 209
++ L + + PP +
Sbjct: 395 RIENE-LGTEIQPIPPSI 411
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 88.2 bits (209), Expect = 1e-18
Identities = 49/142 (34%), Positives = 79/142 (55%), Gaps = 4/142 (2%)
Frame = -3
Query: 658 IGENEKRRKLTEILQRGVEP----PIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQE 491
+ +KR++ E+ +G E ++FV K + +++ L + G++ ++G QE
Sbjct: 324 VNNPKKRKRALELALKGSESGSPDSTLVFVPTKHHVEYVSELLVQAGYSVSKIYGSLDQE 383
Query: 490 QRDFALASLKGGAKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKT 311
R + + + G ++LV TDVA RGIDI ++ VINYD + + HR+GRT RAG+T
Sbjct: 384 ARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVHRVGRTARAGRT 443
Query: 310 GKAMSFVTKEDSALFYDLKQVL 245
G A S V ED+ DL+ L
Sbjct: 444 GWAYSLVRAEDAGYLLDLQLFL 465
Score = 32.3 bits (70), Expect = 0.093
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = -3
Query: 796 RQTVMFTATMPPAVERLARSYLRRPAIVYIGSVGKPVDRTEQIVYMIGENEKRRKLTEIL 617
RQT++F+AT+P + A++ L+ P +V + K + + + E+ L IL
Sbjct: 245 RQTLLFSATLPRTLVDFAKAGLQDPVLVRLDVESKVSADLQSAFFSVKTAEREAALLCIL 304
Query: 616 QRGVEPPI 593
Q ++ P+
Sbjct: 305 QDIIKLPL 312
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 84.2 bits (199), Expect = 2e-17
Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 8/181 (4%)
Frame = -3
Query: 793 QTVMFTATMPPAVERLARSYLRRPAIVYIGSVGKPVDRTEQIVYMIGENEKRRK--LTEI 620
Q V+F+AT VE+ A + + + + V+ +Q+ YM ++E+ + L E+
Sbjct: 288 QIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQL-YMDCQSEEHKYNVLVEL 346
Query: 619 LQRGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDIL 440
IIF +K A+ +A+ + G L G QRD + S + G +L
Sbjct: 347 YGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVL 406
Query: 439 VATDVAGRGIDIKDVSMVINYDM------AKTIEDYTHRIGRTGRAGKTGKAMSFVTKED 278
V T+V RGID+ V++V+NYDM + Y HRIGRTGR G+ G +++FV +
Sbjct: 407 VTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKK 466
Query: 277 S 275
S
Sbjct: 467 S 467
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 76.2 bits (179), Expect = 6e-15
Identities = 48/191 (25%), Positives = 85/191 (44%), Gaps = 4/191 (2%)
Frame = -3
Query: 799 YRQTVMFTATMPPAVERLARSYLRRPAIVYI--GSVGKPVDRTEQIVYMIGENEKRRKLT 626
+RQT++F+AT +V+ LAR L+ P + + Q + EK L
Sbjct: 216 HRQTMLFSATQTKSVKDLARLSLQNPDFISVHENDTSSTPSNLNQFYLTVPLTEKLDILF 275
Query: 625 EILQRGVEPPIIIFVNQKKGADVLAKGLEKL--GFNACTLHGGKGQEQRDFALASLKGGA 452
++ ++ I+F++ K + + ++ G + LHG + Q R A
Sbjct: 276 GFIRTHLKFKTIVFLSSCKQVRFVYETFRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSR 335
Query: 451 KDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSA 272
+L TD+ RG+D V VI D + ++ Y HR+GRT R ++G A+ + + A
Sbjct: 336 HVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSGNALLLLLPSEEA 395
Query: 271 LFYDLKQVLLA 239
L+ +A
Sbjct: 396 FLKRLESKKIA 406
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 73.3 bits (172), Expect = 4e-14
Identities = 59/198 (29%), Positives = 88/198 (44%), Gaps = 8/198 (4%)
Frame = -3
Query: 811 TKKKYRQTVMFTATMPPAVERLARSYLRRP-AIVYIGSVGKPV--DRTEQIVYMIGENEK 641
T K R+ + F+ATMPP V + R L ++ +P +R Q V ++
Sbjct: 217 TTTKTRK-LCFSATMPPKVSNVFRGILGTDFKLINCLDPNEPPTHERVPQFVIETKLDKV 275
Query: 640 RRKLTEILQR----GVEPPIIIFVNQKKGADVLAKGLEK-LGFNACTLHGGKGQEQRDFA 476
+LQ+ II+F+ D + LE L LH G QR
Sbjct: 276 FSSSLSLLQQLTSSNPSSRIIVFLPTISMVDFVGGVLENHLKIPCFILHSGLTTAQRRSI 335
Query: 475 LASLKGGAKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMS 296
S + IL ATDV RG+D +++ V+ +DY HRIGRTGRAGKTG+A
Sbjct: 336 TESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGRTGRAGKTGEAYL 395
Query: 295 FVTKEDSALFYDLKQVLL 242
+ +++ +K + L
Sbjct: 396 ILLEQEKPFLNSIKHLPL 413
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 72.9 bits (171), Expect = 5e-14
Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Frame = -3
Query: 526 NACTLHGGKGQEQRDFAL---ASLKGGAKDILVATDVAGRGIDIKDVSMVINYDMAKTIE 356
N LHG Q+ R L +S + IL+ TDVA RG+D+ +V +V+ YD + +
Sbjct: 469 NVYRLHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTD 528
Query: 355 DYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVLLAS 236
DY HRIGRT RAG G A+ F+ ++S LK + A+
Sbjct: 529 DYLHRIGRTARAGHNGAAIMFLLPKESEYINLLKSSVSAN 568
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 65.7 bits (153), Expect = 8e-12
Identities = 36/95 (37%), Positives = 51/95 (53%)
Frame = -3
Query: 592 IIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILVATDVAGRG 413
++F N + + L +L + LH Q++R +L K K +LV TDVA RG
Sbjct: 393 MVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARG 452
Query: 412 IDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTG 308
IDI V+ VI+Y + T + Y HR GRT RA + G
Sbjct: 453 IDIPSVTHVIHYHVPHTADMYVHRSGRTARANEDG 487
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 63.7 bits (148), Expect = 3e-11
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 21/204 (10%)
Frame = -3
Query: 793 QTVMFTATMPPAVERLARSYLRRPAIVYIGSVGKPVD-----RTEQIVYMIG-------- 653
Q ++F+AT+ ++A L P +V + + VD + IV+ +
Sbjct: 353 QKLVFSATLTRDPSKIASLKLHNPRLVLVQNKDMEVDDGGEIEDDAIVFSVPPTLQEYHV 412
Query: 652 --ENEKRRKLTEILQRGVEPPIIIFVNQKKGADVLAKGLEKL------GFNACTLHGGKG 497
+EK L ++ I+ FV + A L + LE + F+
Sbjct: 413 SVSSEKPILLYHLIHSKNLTNILCFVKSNEAAARLHRLLELIHESLNQSFSCGLFTSSLS 472
Query: 496 QEQRDFALASLKGGAKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAG 317
+++R ++ G ++LV +D+ RGID+ + VINYD ++ Y HRIGRT RAG
Sbjct: 473 RDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAG 532
Query: 316 KTGKAMSFVTKEDSALFYDLKQVL 245
+ G A + V + F L + L
Sbjct: 533 REGFAWTLVQSHEGHHFSKLVKQL 556
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 60.1 bits (139), Expect = 4e-10
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Frame = -3
Query: 538 KLGFNACTLHGGKGQEQRDFALASLK-GGAKDILVATDVAGRGIDIKDVSMVINYDMAKT 362
KL F LHG + Q R K K +L TD+A RG+DI +V V+ D
Sbjct: 280 KLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLD 339
Query: 361 IEDYTHRIGRTGRAGKTGKAM 299
+ ++HR GR GRAG+ G A+
Sbjct: 340 PKSFSHRCGRAGRAGRAGVAI 360
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 58.8 bits (136), Expect = 9e-10
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = -3
Query: 418 RGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFV 290
RG+D ++V+ V+N+DM + Y HRIGRT RAGK G AMSFV
Sbjct: 388 RGLDFENVACVLNFDMPSNTKSYIHRIGRTARAGKPGTAMSFV 430
Score = 36.3 bits (80), Expect = 0.006
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Frame = -3
Query: 793 QTVMFTATMPPAVERLARSYLRRPAIVYIGSVGKPVDRTEQIVYMIGENEKRRKLTEILQ 614
Q+ + +AT+ + L + R P I+ + + + Q V E +K +L+
Sbjct: 197 QSFLMSATLSKNIASLQKLVCRNPFILAVKDK-EASGKLTQYVVKCSEQDKFLLAYILLK 255
Query: 613 -RGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILV 437
R ++ I+IFVN+ L LE+ G + L+ R L G I++
Sbjct: 256 LRLIKGKILIFVNEINRCYRLKLFLEQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIII 315
Query: 436 ATDVAGRGIDIKDVSMVINY 377
ATD +G +I+++ +++
Sbjct: 316 ATDESGMMGEIEELENNVDF 335
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 58.4 bits (135), Expect = 1e-09
Identities = 36/116 (31%), Positives = 52/116 (44%)
Frame = -3
Query: 604 EPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILVATDV 425
E II +++ V AK G A H G + +R + G+ I+VAT
Sbjct: 743 ESGIIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIA 802
Query: 424 AGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDL 257
G G+D DV VI++ K++E Y GR GR GK + F + +D F L
Sbjct: 803 FGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKL 858
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 49.6 bits (113), Expect = 6e-07
Identities = 28/86 (32%), Positives = 44/86 (51%)
Frame = -3
Query: 505 GKGQEQRDFALASLKGGAKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTG 326
G Q Q+ + + G + LVAT + G+DI D M+I YD + + R+GRTG
Sbjct: 514 GMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTG 573
Query: 325 RAGKTGKAMSFVTKEDSALFYDLKQV 248
R K+GK +T++ ++ QV
Sbjct: 574 RK-KSGKVFVLLTEDCEDSKWERSQV 598
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 48.0 bits (109), Expect = 2e-06
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Frame = -3
Query: 592 IIFVNQKKGADVLAKGLEKLGFNACT----LHGGKGQEQRDFALASLKG--GAKDILVAT 431
IIF KK + + + L + A T G E+R + + G I++AT
Sbjct: 1419 IIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIAT 1478
Query: 430 DVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDS 275
G GI+ V +V++Y + + DY GR GR GK A F K DS
Sbjct: 1479 KAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYDS 1530
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 48.0 bits (109), Expect = 2e-06
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Frame = -3
Query: 592 IIFVNQKKGADVLAKGLEKLGFNACT----LHGGKGQEQRDFALASLKG--GAKDILVAT 431
IIF KK + + + L + A T G E+R + + G I++AT
Sbjct: 1419 IIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIAT 1478
Query: 430 DVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDS 275
G GI+ V +V++Y + + DY GR GR GK A F K DS
Sbjct: 1479 KAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFYEKYDS 1530
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 44.4 bits (100), Expect = 2e-05
Identities = 23/74 (31%), Positives = 39/74 (52%)
Frame = -3
Query: 535 LGFNACTLHGGKGQEQRDFALASLKGGAKDILVATDVAGRGIDIKDVSMVINYDMAKTIE 356
+G +A G Q+ ++ + + G + L+AT + G+DI +V M+I YD + +
Sbjct: 465 IGQSAVRKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPI 524
Query: 355 DYTHRIGRTGRAGK 314
R+GRTGR K
Sbjct: 525 RMLQRMGRTGRKRK 538
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 41.5 bits (93), Expect = 2e-04
Identities = 24/73 (32%), Positives = 40/73 (54%)
Frame = -3
Query: 496 QEQRDFALASLKGGAKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAG 317
+ Q+D L K G ++L+AT VA GID+ ++VI +++ +T+ Y GR RA
Sbjct: 410 RRQKD-TLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGR-ARA- 466
Query: 316 KTGKAMSFVTKED 278
K + F+ E+
Sbjct: 467 MASKFLIFLNTEE 479
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 33.9 bits (74), Expect = 0.030
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 8/111 (7%)
Frame = -3
Query: 637 RKLTEILQRGVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKG 458
R L +++ G ++IF K D+L + L G L G EQR
Sbjct: 998 RLLKDLVSNGHR--VLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILTERFNN 1055
Query: 457 GAK--DILVATDVAGRGIDIKDVSMVINYD------MAKTIEDYTHRIGRT 329
K +++T G GI++ VI YD + +D +HRIG+T
Sbjct: 1056 DDKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQT 1106
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 32.3 bits (70), Expect = 0.093
Identities = 25/85 (29%), Positives = 36/85 (42%)
Frame = -3
Query: 496 QEQRDFALASLKGGAKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAG 317
QE+R G I +AT+ GIDI + VI ++ + + GR GR
Sbjct: 597 QERRKIESEMFNGKLYGI-IATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGRRN 655
Query: 316 KTGKAMSFVTKEDSALFYDLKQVLL 242
K+ A+ V FY LK +L
Sbjct: 656 KSSLAVYIVETFPVDQFY-LKHPIL 679
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 30.3 bits (65), Expect = 0.37
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 10/114 (8%)
Frame = -3
Query: 643 KRRKLTEILQRGVE--PPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALA 470
K RKL ++L VE +++F + D+L ++ L G + R +
Sbjct: 762 KVRKLKKLLTNAVENGDRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLID 821
Query: 469 SLKG--GAKDILVATDVAGRGIDIKDVSMVINYDMA------KTIEDYTHRIGR 332
L++T G GI++ +MVI YD++ ED HR+G+
Sbjct: 822 QFYADESINVFLLSTKAGGFGINLACANMVILYDVSFNPFDDLQAEDRAHRVGQ 875
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 30.3 bits (65), Expect = 0.37
Identities = 17/76 (22%), Positives = 33/76 (43%)
Frame = -3
Query: 415 GIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFVTKEDSALFYDLKQVLLAS 236
G + D+ + I+Y ++ +I + +TG + K+ + Y +K L++
Sbjct: 51 GYFVVDIEIPIDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISL 110
Query: 235 SVSTCPPELMNHPEAQ 188
C PE N +AQ
Sbjct: 111 QSLLCTPEPSNPQDAQ 126
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 29.1 bits (62), Expect = 0.86
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -3
Query: 445 ILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFV 290
+ VA RG+ + ++ + + + Y H GR G G+TGK +F+
Sbjct: 474 VFVANPSEIRGLHLPSITHIFHLWSTFSGVAYQHIAGRLGAMGQTGKIFNFI 525
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 531 PSFSSPFARTSAPFFWLTKIIMGGSTPRCKISVSFLRF--SFSPIM*TICSVLSTGFPTD 704
P ++SPF+ +P + LT S+P S +++ S+SP + + PT
Sbjct: 1537 PGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTS 1596
Query: 705 PIYT 716
P Y+
Sbjct: 1597 PSYS 1600
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = -3
Query: 523 ACTLHGGKGQEQRDFALASLKGGAKDILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTH 344
AC L QEQ+ + ++++T++A + I + VI+ +AK I+ +
Sbjct: 340 ACPLFASLPQEQQLQVFLPALANHRKVVLSTNIAETSVTISGIRYVIDTGLAK-IKQFNS 398
Query: 343 RIG 335
++G
Sbjct: 399 KLG 401
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +3
Query: 396 TSLMSIPRPATSVATRISLAPPLRLASAKSRCSWPLPPCSVQALKPSFSSPFARTSAP 569
TS SIP P TS ++ + + PL S S +PP + S S+P T P
Sbjct: 143 TSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTSIPPTGGSS---SLSTPITPTVPP 197
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 396 TSLMSIPRPATSVATRISLAPPLRLASAKSRCSWPLPP 509
TS SIP P TS ++ + + PL S S +PP
Sbjct: 256 TSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPP 293
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 27.1 bits (57), Expect = 3.5
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = -1
Query: 444 SSWRQTWQVVVLTLKMSVWSLITIWRRLLKTTLIVSA 334
+ W T+ ++LT ++S +L W ++ + +L+V A
Sbjct: 421 AGWLLTFLGIILTPEVSAVTLCLFWNKMTRFSLVVGA 457
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = -1
Query: 516 RCMVVKAKNNVTLHLPVSKGALKISSWRQTWQVVVLTLKMSVWSLITIWRRLLKTTLIVS 337
+C+ ++ N + P K +R T+ T + W+L+ IWR + K T+ ++
Sbjct: 583 KCLTLRTDKNPFIEQPDEPNVTK-KIYRVTY-----TDALQRWNLVNIWRHIFKETVTLN 636
Query: 336 A 334
+
Sbjct: 637 S 637
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 26.6 bits (56), Expect = 4.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 311 SFSCTTGTADTMSVVFNSLRHIVINDHTDIFNVNTTTCHVC 433
++S T A SV+ + +V + +D VNT CH C
Sbjct: 147 AYSLTYNPAHPWSVIPEDRKVLVGSTRSDSVFVNTVYCHTC 187
>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 4.6
Identities = 19/74 (25%), Positives = 27/74 (36%)
Frame = -3
Query: 550 KGLEKLGFNACTLHGGKGQEQRDFALASLKGGAKDILVATDVAGRGIDIKDVSMVINYDM 371
KG KL + +E A+ GA ++ D AG G + + YD
Sbjct: 249 KGSAKLSLLPLAMRMAGPREALWHAIIRKNYGASHFIIGRDHAGPGKNSQGEDFYGPYDA 308
Query: 370 AKTIEDYTHRIGRT 329
+E Y IG T
Sbjct: 309 QYLVEQYAQEIGIT 322
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 566 TFFLVNKNNNGWFDTTLQNL 625
TF NK+NNGW ++ NL
Sbjct: 161 TFSFYNKSNNGWQNSIRHNL 180
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 850 AAEDASVLLANYNTKKKYRQTVMFTATMPPAVERL-ARSYLRRP 722
+ + AS L +Y+T + + + PA RL ARSYLR P
Sbjct: 305 SVDSASTALNSYSTPNSVSRKL---TNLTPAARRLVARSYLRSP 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,497,705
Number of Sequences: 5004
Number of extensions: 72637
Number of successful extensions: 267
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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