Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15f07
         (873 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.      157   9e-41
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    25   1.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   1.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.4  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   8.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score =  157 bits (382), Expect = 9e-41
 Identities = 91/223 (40%), Positives = 128/223 (57%), Gaps = 5/223 (2%)
 Frame = -3

Query: 796  RQTVMFTATMPPAVERLARSYLRRPAIVYIGSVGKPVDRTEQIVYMIGENEKRRKLTEIL 617
            RQT+MF+AT P  V+ LAR +L     + +G VG      EQ  Y +  N+K+  L EIL
Sbjct: 383  RQTLMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEIL 442

Query: 616  QR----GVEPPIIIFVNQKKGADVLAKGLEKLGFNACTLHGGKGQEQRDFALASLKGGAK 449
            +R    G     ++FV  KK AD +A  L +  +   ++HG + Q QR+ ALA  K G  
Sbjct: 443  ERENDSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSGRM 502

Query: 448  DILVATDVAGRGIDIKDVSMVINYDMAKTIEDYTHRIGRTGRAGKTGKAMSFV-TKEDSA 272
             ILVAT VA RG+DIK+VS VINYD+ K I++Y HRIGRTGR G  G+A SF   +ED+ 
Sbjct: 503  SILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGRTGRVGNRGRATSFFDPEEDAP 562

Query: 271  LFYDLKQVLLASSVSTCPPELMNHPEAQHKPGTVVTKKRREEM 143
            L  DL ++L  ++ S     +  +      PG  ++K   E++
Sbjct: 563  LRGDLVRILKQANQSVPDWMMGGNANRNFMPGRGISKFGGEDV 605


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/48 (25%), Positives = 16/48 (33%)
 Frame = +2

Query: 422 CHVCRHEDIFSAPFETGKCKVTLFLAFTTMQRTGIETKFFKSLCKNIC 565
           C  C H  +FS  F  G C   +      +        F   +CK  C
Sbjct: 35  CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFAFKSIICKCFC 82


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 12/48 (25%), Positives = 16/48 (33%)
 Frame = +2

Query: 422 CHVCRHEDIFSAPFETGKCKVTLFLAFTTMQRTGIETKFFKSLCKNIC 565
           C  C H  +FS  F  G C   +      +        F   +CK  C
Sbjct: 483 CRNCIHPTVFSVLFWLGYCNSAINPCIYALFSKDFRFAFKSIICKCFC 530



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -3

Query: 739 SYLRRPAIVYIGSVGKPVDRTEQIVYMIGENEKRRKLTEILQ 614
           ++L+   I  +GS  +P  R      M+G+    R+LT++ +
Sbjct: 388 THLKVSGINRVGSTRRPSRRNSCESQMMGDEMSLRELTQVTE 429


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +3

Query: 384 MTILTSLMSIPRPATSVATRISLAPPLRLASAKSRCSWPLPPCSVQALKP 533
           + + T+LMS P P   V+    ++    +++ +S     LPP +   + P
Sbjct: 370 LNLSTALMSQPPPNFGVSQVSPVSMSALVSAVRSPAGGQLPPSAGAPMPP 419


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 7/43 (16%), Positives = 24/43 (55%)
 Frame = -1

Query: 492 NNVTLHLPVSKGALKISSWRQTWQVVVLTLKMSVWSLITIWRR 364
           NN T+++ V+    ++  W++ + + +L L   +  ++ + ++
Sbjct: 90  NNATINIDVTLQNDEVLDWKKIFDINLLGLTCMIQEVLKLMKK 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,326
Number of Sequences: 438
Number of extensions: 5545
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)