Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15f04
(797 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D16562-1|BAA03996.1| 298|Homo sapiens ATP synthase gamma-subuni... 240 4e-63
D16561-2|BAA03995.1| 298|Homo sapiens ATP synthase gamma-subuni... 240 4e-63
CR457403-1|CAG33684.1| 298|Homo sapiens ATP5C1 protein. 240 4e-63
BC026049-1|AAH26049.1| 291|Homo sapiens Unknown (protein for IM... 240 4e-63
BC020824-1|AAH20824.1| 298|Homo sapiens ATP synthase, H+ transp... 240 4e-63
BC016812-1|AAH16812.1| 298|Homo sapiens ATP synthase, H+ transp... 240 4e-63
BC013394-1|AAH13394.1| 298|Homo sapiens ATP synthase, H+ transp... 240 4e-63
BC000931-1|AAH00931.1| 298|Homo sapiens ATP synthase, H+ transp... 240 4e-63
BC000470-1|AAH00470.1| 298|Homo sapiens ATP synthase, H+ transp... 240 4e-63
AL353754-3|CAH73453.1| 298|Homo sapiens ATP synthase, H+ transp... 240 4e-63
AL158044-8|CAI12960.1| 298|Homo sapiens ATP synthase, H+ transp... 240 4e-63
D16563-1|BAA03997.1| 297|Homo sapiens ATP synthase gamma-subuni... 238 2e-62
D16561-1|BAA03994.1| 297|Homo sapiens ATP synthase gamma-subuni... 238 2e-62
AL353754-4|CAH73454.1| 297|Homo sapiens ATP synthase, H+ transp... 238 2e-62
AL158044-9|CAI12961.1| 297|Homo sapiens ATP synthase, H+ transp... 238 2e-62
AL163281-2|CAB90444.1| 1029|Homo sapiens human CHD2-52 down synd... 30 8.4
AF289030-1|AAL56711.1| 1746|Homo sapiens Down syndrome cell adhe... 30 8.4
AF217525-1|AAF27525.1| 2012|Homo sapiens Down syndrome cell adhe... 30 8.4
AF023450-1|AAC17967.1| 1571|Homo sapiens Down syndrome cell adhe... 30 8.4
AF023449-1|AAC17966.1| 1896|Homo sapiens Down syndrome cell adhe... 30 8.4
AB209136-1|BAD92373.1| 2023|Homo sapiens Down syndrome cell adhe... 30 8.4
>D16562-1|BAA03996.1| 298|Homo sapiens ATP synthase gamma-subunit
protein.
Length = 298
Score = 240 bits (588), Expect = 4e-63
Identities = 112/201 (55%), Positives = 154/201 (76%), Gaps = 2/201 (0%)
Frame = -1
Query: 797 SDRGLCGAVHTGVSKVIRNRLSEPGA--ENIKVICVGDKSRGILQRLYGKHIISVANEIG 624
SDRGLCGA+H+ ++K +++ ++ A + + ++ +GDK RGIL R + + E+G
Sbjct: 98 SDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVG 157
Query: 623 RLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTA 444
R PPTF DAS +A +L SGYEF G II+NKF+SV+SY + P+++ ++ SA ++
Sbjct: 158 RKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSI 217
Query: 443 YDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNR 264
YD +D+DVLQ+Y E++LA++++Y+LKE SEQS+RMTAMDNASKNA EMIDKLTLTFNR
Sbjct: 218 YDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 277
Query: 263 TRQAVITRELIEIISGAAALD 201
TRQAVIT+ELIEIISGAAALD
Sbjct: 278 TRQAVITKELIEIISGAAALD 298
>D16561-2|BAA03995.1| 298|Homo sapiens ATP synthase gamma-subunit
protein.
Length = 298
Score = 240 bits (588), Expect = 4e-63
Identities = 112/201 (55%), Positives = 154/201 (76%), Gaps = 2/201 (0%)
Frame = -1
Query: 797 SDRGLCGAVHTGVSKVIRNRLSEPGA--ENIKVICVGDKSRGILQRLYGKHIISVANEIG 624
SDRGLCGA+H+ ++K +++ ++ A + + ++ +GDK RGIL R + + E+G
Sbjct: 98 SDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVG 157
Query: 623 RLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTA 444
R PPTF DAS +A +L SGYEF G II+NKF+SV+SY + P+++ ++ SA ++
Sbjct: 158 RKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSI 217
Query: 443 YDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNR 264
YD +D+DVLQ+Y E++LA++++Y+LKE SEQS+RMTAMDNASKNA EMIDKLTLTFNR
Sbjct: 218 YDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 277
Query: 263 TRQAVITRELIEIISGAAALD 201
TRQAVIT+ELIEIISGAAALD
Sbjct: 278 TRQAVITKELIEIISGAAALD 298
>CR457403-1|CAG33684.1| 298|Homo sapiens ATP5C1 protein.
Length = 298
Score = 240 bits (588), Expect = 4e-63
Identities = 112/201 (55%), Positives = 154/201 (76%), Gaps = 2/201 (0%)
Frame = -1
Query: 797 SDRGLCGAVHTGVSKVIRNRLSEPGA--ENIKVICVGDKSRGILQRLYGKHIISVANEIG 624
SDRGLCGA+H+ ++K +++ ++ A + + ++ +GDK RGIL R + + E+G
Sbjct: 98 SDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVG 157
Query: 623 RLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTA 444
R PPTF DAS +A +L SGYEF G II+NKF+SV+SY + P+++ ++ SA ++
Sbjct: 158 RKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSI 217
Query: 443 YDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNR 264
YD +D+DVLQ+Y E++LA++++Y+LKE SEQS+RMTAMDNASKNA EMIDKLTLTFNR
Sbjct: 218 YDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 277
Query: 263 TRQAVITRELIEIISGAAALD 201
TRQAVIT+ELIEIISGAAALD
Sbjct: 278 TRQAVITKELIEIISGAAALD 298
>BC026049-1|AAH26049.1| 291|Homo sapiens Unknown (protein for
IMAGE:4908447) protein.
Length = 291
Score = 240 bits (588), Expect = 4e-63
Identities = 112/201 (55%), Positives = 154/201 (76%), Gaps = 2/201 (0%)
Frame = -1
Query: 797 SDRGLCGAVHTGVSKVIRNRLSEPGA--ENIKVICVGDKSRGILQRLYGKHIISVANEIG 624
SDRGLCGA+H+ ++K +++ ++ A + + ++ +GDK RGIL R + + E+G
Sbjct: 91 SDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVG 150
Query: 623 RLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTA 444
R PPTF DAS +A +L SGYEF G II+NKF+SV+SY + P+++ ++ SA ++
Sbjct: 151 RKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSI 210
Query: 443 YDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNR 264
YD +D+DVLQ+Y E++LA++++Y+LKE SEQS+RMTAMDNASKNA EMIDKLTLTFNR
Sbjct: 211 YDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 270
Query: 263 TRQAVITRELIEIISGAAALD 201
TRQAVIT+ELIEIISGAAALD
Sbjct: 271 TRQAVITKELIEIISGAAALD 291
>BC020824-1|AAH20824.1| 298|Homo sapiens ATP synthase, H+
transporting, mitochondrial F1 complex, gamma
polypeptide 1 protein.
Length = 298
Score = 240 bits (588), Expect = 4e-63
Identities = 112/201 (55%), Positives = 154/201 (76%), Gaps = 2/201 (0%)
Frame = -1
Query: 797 SDRGLCGAVHTGVSKVIRNRLSEPGA--ENIKVICVGDKSRGILQRLYGKHIISVANEIG 624
SDRGLCGA+H+ ++K +++ ++ A + + ++ +GDK RGIL R + + E+G
Sbjct: 98 SDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVG 157
Query: 623 RLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTA 444
R PPTF DAS +A +L SGYEF G II+NKF+SV+SY + P+++ ++ SA ++
Sbjct: 158 RKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSI 217
Query: 443 YDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNR 264
YD +D+DVLQ+Y E++LA++++Y+LKE SEQS+RMTAMDNASKNA EMIDKLTLTFNR
Sbjct: 218 YDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 277
Query: 263 TRQAVITRELIEIISGAAALD 201
TRQAVIT+ELIEIISGAAALD
Sbjct: 278 TRQAVITKELIEIISGAAALD 298
>BC016812-1|AAH16812.1| 298|Homo sapiens ATP synthase, H+
transporting, mitochondrial F1 complex, gamma
polypeptide 1 protein.
Length = 298
Score = 240 bits (588), Expect = 4e-63
Identities = 112/201 (55%), Positives = 154/201 (76%), Gaps = 2/201 (0%)
Frame = -1
Query: 797 SDRGLCGAVHTGVSKVIRNRLSEPGA--ENIKVICVGDKSRGILQRLYGKHIISVANEIG 624
SDRGLCGA+H+ ++K +++ ++ A + + ++ +GDK RGIL R + + E+G
Sbjct: 98 SDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVG 157
Query: 623 RLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTA 444
R PPTF DAS +A +L SGYEF G II+NKF+SV+SY + P+++ ++ SA ++
Sbjct: 158 RKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSI 217
Query: 443 YDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNR 264
YD +D+DVLQ+Y E++LA++++Y+LKE SEQS+RMTAMDNASKNA EMIDKLTLTFNR
Sbjct: 218 YDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 277
Query: 263 TRQAVITRELIEIISGAAALD 201
TRQAVIT+ELIEIISGAAALD
Sbjct: 278 TRQAVITKELIEIISGAAALD 298
>BC013394-1|AAH13394.1| 298|Homo sapiens ATP synthase, H+
transporting, mitochondrial F1 complex, gamma
polypeptide 1 protein.
Length = 298
Score = 240 bits (588), Expect = 4e-63
Identities = 112/201 (55%), Positives = 154/201 (76%), Gaps = 2/201 (0%)
Frame = -1
Query: 797 SDRGLCGAVHTGVSKVIRNRLSEPGA--ENIKVICVGDKSRGILQRLYGKHIISVANEIG 624
SDRGLCGA+H+ ++K +++ ++ A + + ++ +GDK RGIL R + + E+G
Sbjct: 98 SDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVG 157
Query: 623 RLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTA 444
R PPTF DAS +A +L SGYEF G II+NKF+SV+SY + P+++ ++ SA ++
Sbjct: 158 RKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSI 217
Query: 443 YDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNR 264
YD +D+DVLQ+Y E++LA++++Y+LKE SEQS+RMTAMDNASKNA EMIDKLTLTFNR
Sbjct: 218 YDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 277
Query: 263 TRQAVITRELIEIISGAAALD 201
TRQAVIT+ELIEIISGAAALD
Sbjct: 278 TRQAVITKELIEIISGAAALD 298
>BC000931-1|AAH00931.1| 298|Homo sapiens ATP synthase, H+
transporting, mitochondrial F1 complex, gamma
polypeptide 1 protein.
Length = 298
Score = 240 bits (588), Expect = 4e-63
Identities = 112/201 (55%), Positives = 154/201 (76%), Gaps = 2/201 (0%)
Frame = -1
Query: 797 SDRGLCGAVHTGVSKVIRNRLSEPGA--ENIKVICVGDKSRGILQRLYGKHIISVANEIG 624
SDRGLCGA+H+ ++K +++ ++ A + + ++ +GDK RGIL R + + E+G
Sbjct: 98 SDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVG 157
Query: 623 RLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTA 444
R PPTF DAS +A +L SGYEF G II+NKF+SV+SY + P+++ ++ SA ++
Sbjct: 158 RKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSI 217
Query: 443 YDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNR 264
YD +D+DVLQ+Y E++LA++++Y+LKE SEQS+RMTAMDNASKNA EMIDKLTLTFNR
Sbjct: 218 YDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 277
Query: 263 TRQAVITRELIEIISGAAALD 201
TRQAVIT+ELIEIISGAAALD
Sbjct: 278 TRQAVITKELIEIISGAAALD 298
>BC000470-1|AAH00470.1| 298|Homo sapiens ATP synthase, H+
transporting, mitochondrial F1 complex, gamma
polypeptide 1 protein.
Length = 298
Score = 240 bits (588), Expect = 4e-63
Identities = 112/201 (55%), Positives = 154/201 (76%), Gaps = 2/201 (0%)
Frame = -1
Query: 797 SDRGLCGAVHTGVSKVIRNRLSEPGA--ENIKVICVGDKSRGILQRLYGKHIISVANEIG 624
SDRGLCGA+H+ ++K +++ ++ A + + ++ +GDK RGIL R + + E+G
Sbjct: 98 SDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVG 157
Query: 623 RLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTA 444
R PPTF DAS +A +L SGYEF G II+NKF+SV+SY + P+++ ++ SA ++
Sbjct: 158 RKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSI 217
Query: 443 YDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNR 264
YD +D+DVLQ+Y E++LA++++Y+LKE SEQS+RMTAMDNASKNA EMIDKLTLTFNR
Sbjct: 218 YDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 277
Query: 263 TRQAVITRELIEIISGAAALD 201
TRQAVIT+ELIEIISGAAALD
Sbjct: 278 TRQAVITKELIEIISGAAALD 298
>AL353754-3|CAH73453.1| 298|Homo sapiens ATP synthase, H+
transporting, mitochondrial F1 complex, gamma
polypeptide 1 protein.
Length = 298
Score = 240 bits (588), Expect = 4e-63
Identities = 112/201 (55%), Positives = 154/201 (76%), Gaps = 2/201 (0%)
Frame = -1
Query: 797 SDRGLCGAVHTGVSKVIRNRLSEPGA--ENIKVICVGDKSRGILQRLYGKHIISVANEIG 624
SDRGLCGA+H+ ++K +++ ++ A + + ++ +GDK RGIL R + + E+G
Sbjct: 98 SDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVG 157
Query: 623 RLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTA 444
R PPTF DAS +A +L SGYEF G II+NKF+SV+SY + P+++ ++ SA ++
Sbjct: 158 RKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSI 217
Query: 443 YDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNR 264
YD +D+DVLQ+Y E++LA++++Y+LKE SEQS+RMTAMDNASKNA EMIDKLTLTFNR
Sbjct: 218 YDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 277
Query: 263 TRQAVITRELIEIISGAAALD 201
TRQAVIT+ELIEIISGAAALD
Sbjct: 278 TRQAVITKELIEIISGAAALD 298
>AL158044-8|CAI12960.1| 298|Homo sapiens ATP synthase, H+
transporting, mitochondrial F1 complex, gamma
polypeptide 1 protein.
Length = 298
Score = 240 bits (588), Expect = 4e-63
Identities = 112/201 (55%), Positives = 154/201 (76%), Gaps = 2/201 (0%)
Frame = -1
Query: 797 SDRGLCGAVHTGVSKVIRNRLSEPGA--ENIKVICVGDKSRGILQRLYGKHIISVANEIG 624
SDRGLCGA+H+ ++K +++ ++ A + + ++ +GDK RGIL R + + E+G
Sbjct: 98 SDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVG 157
Query: 623 RLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTA 444
R PPTF DAS +A +L SGYEF G II+NKF+SV+SY + P+++ ++ SA ++
Sbjct: 158 RKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSI 217
Query: 443 YDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNR 264
YD +D+DVLQ+Y E++LA++++Y+LKE SEQS+RMTAMDNASKNA EMIDKLTLTFNR
Sbjct: 218 YDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 277
Query: 263 TRQAVITRELIEIISGAAALD 201
TRQAVIT+ELIEIISGAAALD
Sbjct: 278 TRQAVITKELIEIISGAAALD 298
>D16563-1|BAA03997.1| 297|Homo sapiens ATP synthase gamma-subunit
protein.
Length = 297
Score = 238 bits (582), Expect = 2e-62
Identities = 111/200 (55%), Positives = 153/200 (76%), Gaps = 2/200 (1%)
Frame = -1
Query: 797 SDRGLCGAVHTGVSKVIRNRLSEPGA--ENIKVICVGDKSRGILQRLYGKHIISVANEIG 624
SDRGLCGA+H+ ++K +++ ++ A + + ++ +GDK RGIL R + + E+G
Sbjct: 98 SDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVG 157
Query: 623 RLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTA 444
R PPTF DAS +A +L SGYEF G II+NKF+SV+SY + P+++ ++ SA ++
Sbjct: 158 RKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSI 217
Query: 443 YDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNR 264
YD +D+DVLQ+Y E++LA++++Y+LKE SEQS+RMTAMDNASKNA EMIDKLTLTFNR
Sbjct: 218 YDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 277
Query: 263 TRQAVITRELIEIISGAAAL 204
TRQAVIT+ELIEIISGAAAL
Sbjct: 278 TRQAVITKELIEIISGAAAL 297
>D16561-1|BAA03994.1| 297|Homo sapiens ATP synthase gamma-subunit
protein.
Length = 297
Score = 238 bits (582), Expect = 2e-62
Identities = 111/200 (55%), Positives = 153/200 (76%), Gaps = 2/200 (1%)
Frame = -1
Query: 797 SDRGLCGAVHTGVSKVIRNRLSEPGA--ENIKVICVGDKSRGILQRLYGKHIISVANEIG 624
SDRGLCGA+H+ ++K +++ ++ A + + ++ +GDK RGIL R + + E+G
Sbjct: 98 SDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVG 157
Query: 623 RLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTA 444
R PPTF DAS +A +L SGYEF G II+NKF+SV+SY + P+++ ++ SA ++
Sbjct: 158 RKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSI 217
Query: 443 YDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNR 264
YD +D+DVLQ+Y E++LA++++Y+LKE SEQS+RMTAMDNASKNA EMIDKLTLTFNR
Sbjct: 218 YDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 277
Query: 263 TRQAVITRELIEIISGAAAL 204
TRQAVIT+ELIEIISGAAAL
Sbjct: 278 TRQAVITKELIEIISGAAAL 297
>AL353754-4|CAH73454.1| 297|Homo sapiens ATP synthase, H+
transporting, mitochondrial F1 complex, gamma
polypeptide 1 protein.
Length = 297
Score = 238 bits (582), Expect = 2e-62
Identities = 111/200 (55%), Positives = 153/200 (76%), Gaps = 2/200 (1%)
Frame = -1
Query: 797 SDRGLCGAVHTGVSKVIRNRLSEPGA--ENIKVICVGDKSRGILQRLYGKHIISVANEIG 624
SDRGLCGA+H+ ++K +++ ++ A + + ++ +GDK RGIL R + + E+G
Sbjct: 98 SDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVG 157
Query: 623 RLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTA 444
R PPTF DAS +A +L SGYEF G II+NKF+SV+SY + P+++ ++ SA ++
Sbjct: 158 RKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSI 217
Query: 443 YDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNR 264
YD +D+DVLQ+Y E++LA++++Y+LKE SEQS+RMTAMDNASKNA EMIDKLTLTFNR
Sbjct: 218 YDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 277
Query: 263 TRQAVITRELIEIISGAAAL 204
TRQAVIT+ELIEIISGAAAL
Sbjct: 278 TRQAVITKELIEIISGAAAL 297
>AL158044-9|CAI12961.1| 297|Homo sapiens ATP synthase, H+
transporting, mitochondrial F1 complex, gamma
polypeptide 1 protein.
Length = 297
Score = 238 bits (582), Expect = 2e-62
Identities = 111/200 (55%), Positives = 153/200 (76%), Gaps = 2/200 (1%)
Frame = -1
Query: 797 SDRGLCGAVHTGVSKVIRNRLSEPGA--ENIKVICVGDKSRGILQRLYGKHIISVANEIG 624
SDRGLCGA+H+ ++K +++ ++ A + + ++ +GDK RGIL R + + E+G
Sbjct: 98 SDRGLCGAIHSSIAKQMKSEVATLTAAGKEVMLVGIGDKIRGILYRTHSDQFLVAFKEVG 157
Query: 623 RLPPTFLDASQLATAILTSGYEFGSGKIIYNKFKSVVSYAQSDLPLYTKKSIESASKLTA 444
R PPTF DAS +A +L SGYEF G II+NKF+SV+SY + P+++ ++ SA ++
Sbjct: 158 RKPPTFGDASVIALELLNSGYEFDEGSIIFNKFRSVISYKTEEKPIFSLNTVASADSMSI 217
Query: 443 YDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAGEMIDKLTLTFNR 264
YD +D+DVLQ+Y E++LA++++Y+LKE SEQS+RMTAMDNASKNA EMIDKLTLTFNR
Sbjct: 218 YDDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDKLTLTFNR 277
Query: 263 TRQAVITRELIEIISGAAAL 204
TRQAVIT+ELIEIISGAAAL
Sbjct: 278 TRQAVITKELIEIISGAAAL 297
>AL163281-2|CAB90444.1| 1029|Homo sapiens human CHD2-52 down
syndrome cell adhesion molecule protein.
Length = 1029
Score = 30.3 bits (65), Expect = 8.4
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -1
Query: 449 TAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAG 300
T SL+ D L+ YT +S+ L F +G SEQ T D AG
Sbjct: 162 TTQPSLELDGLEKYTNYSIQVLAFTRAGDGVRSEQIFTRTKEDVPGPPAG 211
>AF289030-1|AAL56711.1| 1746|Homo sapiens Down syndrome cell adhesion
molecule splice variant protein.
Length = 1746
Score = 30.3 bits (65), Expect = 8.4
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -1
Query: 449 TAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAG 300
T SL+ D L+ YT +S+ L F +G SEQ T D AG
Sbjct: 897 TTQPSLELDGLEKYTNYSIQVLAFTRAGDGVRSEQIFTRTKEDVPGPPAG 946
>AF217525-1|AAF27525.1| 2012|Homo sapiens Down syndrome cell adhesion
molecule protein.
Length = 2012
Score = 30.3 bits (65), Expect = 8.4
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -1
Query: 449 TAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAG 300
T SL+ D L+ YT +S+ L F +G SEQ T D AG
Sbjct: 1145 TTQPSLELDGLEKYTNYSIQVLAFTRAGDGVRSEQIFTRTKEDVPGPPAG 1194
>AF023450-1|AAC17967.1| 1571|Homo sapiens Down syndrome cell adhesion
molecule protein.
Length = 1571
Score = 30.3 bits (65), Expect = 8.4
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -1
Query: 449 TAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAG 300
T SL+ D L+ YT +S+ L F +G SEQ T D AG
Sbjct: 1145 TTQPSLELDGLEKYTNYSIQVLAFTRAGDGVRSEQIFTRTKEDVPGPPAG 1194
>AF023449-1|AAC17966.1| 1896|Homo sapiens Down syndrome cell adhesion
molecule protein.
Length = 1896
Score = 30.3 bits (65), Expect = 8.4
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -1
Query: 449 TAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAG 300
T SL+ D L+ YT +S+ L F +G SEQ T D AG
Sbjct: 1131 TTQPSLELDGLEKYTNYSIQVLAFTRAGDGVRSEQIFTRTKEDVPGPPAG 1180
>AB209136-1|BAD92373.1| 2023|Homo sapiens Down syndrome cell adhesion
molecule isoform CHD2-42 precursor variant protein.
Length = 2023
Score = 30.3 bits (65), Expect = 8.4
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -1
Query: 449 TAYDSLDSDVLQSYTEFSLASLLFYALKEGACSEQSSRMTAMDNASKNAG 300
T SL+ D L+ YT +S+ L F +G SEQ T D AG
Sbjct: 1156 TTQPSLELDGLEKYTNYSIQVLAFTRAGDGVRSEQIFTRTKEDVPGPPAG 1205
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,173,772
Number of Sequences: 237096
Number of extensions: 1878657
Number of successful extensions: 4272
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 4139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4257
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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