Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15f04
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.3  
AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    23   4.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   7.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 465 LNRLLSVEGQVGLGVRDHRLELVVNDLSGTKLVSRGEDSSGQLTCVQES 611
           L R + V     + + DHR  +    L  + +V   +D S  L CV ++
Sbjct: 215 LTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQDESTSLVCVAQA 263


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +3

Query: 465 LNRLLSVEGQVGLGVRDHRLELVVNDLSGTKLVSRGEDSSGQLTCVQES 611
           L R + V     + + DHR  +    L  + +V   +D S  L CV ++
Sbjct: 215 LTRQVVVSSVANVRIADHRGVMPPVILENSGVVHVAQDESTSLVCVAQA 263


>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 649 MCFPYNLCRIPRDLSPTQITL 711
           M  PY++ ++P  LSP   T+
Sbjct: 1   MSSPYHVAQLPHHLSPNMPTM 21


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 192 GGLVQGGRTRDDLDELPGDDS 254
           GG+ Q G+ +++ D+   D+S
Sbjct: 73  GGIQQAGKPKEETDDKDDDES 93


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 75  WVKIFFLYFL 104
           WVK+ FLY+L
Sbjct: 331 WVKVVFLYWL 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,195
Number of Sequences: 438
Number of extensions: 3530
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)