Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15e24
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    28   1.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.4  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    27   2.5  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    26   5.7  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   5.7  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    25   9.9  

>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 518 CSKPFRSFIQTYFLSQKSPSGFKRDYIKFYVTLL 619
           CS P  SFI +   S+KS +  KRD ++  + LL
Sbjct: 746 CSLPLSSFIASILNSRKSDNFLKRDALEMCLFLL 779


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +2

Query: 155 KVNKTLLIFKNIDKDIVIGLVPFSSLIVNRFLLFSTYMMSYSVSKNLIVQIKDFTSY 325
           KV K   +FK I  DI +      SL ++  LL+ST+   +  +     ++ DF ++
Sbjct: 336 KVGKIDALFKEISLDIFLSSSTLESLQLSAALLYSTFSKKWRNTGYPETRVLDFINF 392


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 376 RYCLLRSDFVYSANIRIYTK*SKYSCRLSKIRSYYETLALVCSTL 510
           R C+  +  V++ ++R+Y K  K   R  ++   Y T   VCS L
Sbjct: 523 RKCIDCARAVFAFSLRVYPKSEKLWLRAVELEKLYGTTESVCSIL 567


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 372 GFESFHFSYYDLFLLQYDVKSFI 304
           G +S + SYYD  L  ++++SF+
Sbjct: 185 GIDSINESYYDQLLQVFEIRSFV 207


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 158 VNKTLLIFKNIDKDIVIGLVPFSSLIVNRFLLFSTYMMSYSVSK 289
           V + L+ F   D  I   ++P +SL     +L STY+ +YS SK
Sbjct: 218 VTEVLMFF---DSMIRYSVIPKASLYDTVLILCSTYISTYSYSK 258


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = +1

Query: 40  YLPTHXFVLKFHSIIVFINNKKKCHLHRI 126
           YL    + L FH   ++++++  CH+ +I
Sbjct: 467 YLDLKSYKLGFHWCDIYVDSEHNCHIQKI 495


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,059
Number of Sequences: 5004
Number of extensions: 50132
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)