Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15e20
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomy...   205   7e-54
SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr 3||...    29   1.1  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    27   3.5  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   4.6  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    27   4.6  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.1  

>SPAC31G5.05c |||ribulose phosphate 3-epimerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 228

 Score =  205 bits (500), Expect = 7e-54
 Identities = 100/219 (45%), Positives = 145/219 (66%), Gaps = 2/219 (0%)
 Frame = -1

Query: 723 LKALIGPSILNADLSQLYEESQKLLDNGADYLHLDVMDGQFVPNLTFGHPVVKCLRGKI- 547
           ++A I PS+L  D + L +E  ++L  G+D+LH+DVMD QFVPNLT G  VVK +R    
Sbjct: 2   VQAKIAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIGPIVVKAMRNHYT 61

Query: 546 -KDAFFETHMMVEKPEQWITPMADAGVNQYTFHIEPVKDVIEVCRKVREHGMKVGVAIKP 370
            ++AFF+ H+MV +PE++I  +ADAG + + FH E  +   E+  +  E GM VG A+KP
Sbjct: 62  KEEAFFDCHLMVIEPERYIDQLADAGASLFCFHYEATEKHEEIISRAHEKGMLVGCALKP 121

Query: 369 GTPVSEVEKYISISDMVLIMTVEPGFGGQKFMENQMAKVQYLRENYPLLDIEVDGGVGPS 190
            TPV  +  ++   DMVL+MTVEPG GGQ FM   + KV++LR+ YP L++EVDGG+   
Sbjct: 122 KTPVEVILPFVEKLDMVLVMTVEPGKGGQSFMPECLPKVEFLRKKYPTLNVEVDGGLSLK 181

Query: 189 TINCCANAGANMIVSGTAIIGSADQAATIKLLRSTVQDA 73
           T++  A+AGAN+IV+GTA+  +      I  LR++V  A
Sbjct: 182 TVDAAADAGANVIVAGTAVFHAQSPEEVISGLRNSVMKA 220


>SPCC61.03 |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 327

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 312 MTVEPGFGGQKFMENQMAKV-QYLRENYPLLDIEVDG 205
           + + PG G  ++M+  MAKV +Y R+N   + I+ DG
Sbjct: 116 IVIGPGLGRDEWMQEIMAKVIEYARKNDMPMVIDADG 152


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 643 WSRLFTFRCNGWSVCT 596
           WSR F   C G+SVCT
Sbjct: 6   WSRNFLCSCRGFSVCT 21


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 469 DSSISHWCYPLLWFLNHHVSFKKGIFYFSSKALH 570
           D+ I +  YP    L+ H+S KK I YFS+K  H
Sbjct: 419 DNLIDNLKYPQS--LDDHLSSKKPISYFSNKLTH 450


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -1

Query: 738 KMTRHLKALIGPSILNADLSQLYEESQKLLD-NGADY----LHLDVMDGQFVPNLTFGH 577
           K   HLK +I  + LNA+  QLY E   L+   G  Y     +L+ +  QF  + +FG+
Sbjct: 779 KQHPHLKIIIMSATLNAEKFQLYFEGSNLITIPGKTYPVHRFYLEDILSQFGNDKSFGN 837


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/44 (25%), Positives = 29/44 (65%)
 Frame = -1

Query: 195 PSTINCCANAGANMIVSGTAIIGSADQAATIKLLRSTVQDAINK 64
           PST +   ++ +    SGT++I ++D +A+ +++ S+  ++I++
Sbjct: 71  PSTSSSSPSSTSTSSSSGTSVITASDVSASNEIISSSTNNSIHQ 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,386,109
Number of Sequences: 5004
Number of extensions: 68779
Number of successful extensions: 186
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)