Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15e19
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase catal...   244   2e-65
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ...    40   4e-04
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    29   1.1  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    28   1.8  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    27   3.2  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    25   9.8  

>SPAC31G5.16c |dpm1||dolichol-phosphate mannosyltransferase
           catalytic subunit Dpm1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score =  244 bits (596), Expect = 2e-65
 Identities = 113/171 (66%), Positives = 139/171 (81%)
 Frame = -2

Query: 822 KIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFIKLQLKYDYDIVSG 643
           KI+L+PR  KLGLGTAYIHG++ A+G+F+IIMDAD SHHPK++PEFIKLQ +++YDIV G
Sbjct: 63  KILLKPRSGKLGLGTAYIHGLKFATGDFVIIMDADFSHHPKYLPEFIKLQKEHNYDIVLG 122

Query: 642 TRYKGSGGVYGWDFKRKLISRGANFLTQLMLRPGVSDLTGSFRLYKKEVLEKLILSCVSK 463
           TRY   GGVYGW+ KRK ISRGAN L   +L  GVSD+TGSFRLYKK VLE L+    SK
Sbjct: 123 TRYAKDGGVYGWNLKRKFISRGANLLASTVLGTGVSDVTGSFRLYKKPVLETLMSEVTSK 182

Query: 462 GYVFQMEMIIRARQFDYSIGEVPISFVDRVYGESKLGGSEIVQFAKALLYL 310
           GYVFQME+I RAR+ +Y+IGEVPI+FVDR+YGESKLG  +I+ + K +  L
Sbjct: 183 GYVFQMEIIARAREHNYTIGEVPIAFVDRLYGESKLGMDDILGYLKGVFSL 233


>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
           Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 3/138 (2%)
 Frame = -2

Query: 789 GLGTAYIHGIQQASGNFIIIMDAD-LSHHPKFIPEFIKLQLKYDYDIVSGTRYK--GSGG 619
           G G A   G+  A G + I  DAD  S        F  +       +V G+R     +  
Sbjct: 143 GKGGAVTWGMLYARGQYAIFADADGASQFSDLELLFKNMPPGPRGGVVVGSRAHMVNTAA 202

Query: 618 VYGWDFKRKLISRGANFLTQLMLRPGVSDLTGSFRLYKKEVLEKLILSCVSKGYVFQMEM 439
           V    F R  +    + L Q++    + D    F+L+ +E  + +      +G++F +E+
Sbjct: 203 VVKRSFIRNFLMHCFHKLLQILGIREIGDTQCGFKLFSREAYQSIFPRMHVEGWIFDIEV 262

Query: 438 IIRARQFDYSIGEVPISF 385
           +  AR F   I EVPI++
Sbjct: 263 LTLARFFGLPIIEVPITW 280


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 796 EAWSRNCLHSWDTASFWKFYY 734
           E +++NC   WD++ FWK ++
Sbjct: 41  EKYAKNCNTIWDSSKFWKQFF 61


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = -2

Query: 534 DLTGSFRLYKKEVLEKLILSCVSKGYVFQMEMIIRARQFDYSIGEVPISFVDRVYG 367
           D  G FR++  E +E+ +L+   K +    EMI  A  F Y   E+P   V  V G
Sbjct: 280 DAWGIFRVHAFEKIEQFVLTDPEKSWEAFTEMINHAEDF-YKSLELPYRIVAIVSG 334


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 408 IGEVPISFVDRVYGESKLGGSEIVQFAKAL 319
           IG   + F+D   G+ +LGGS + Q  K L
Sbjct: 840 IGSTSLIFIDLANGKQRLGGSILAQSYKQL 869


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 450 QMEMIIRARQFDYSIGEVPISFVDRVYGESKL 355
           + ++ +R  QF+Y   E   SFV+R++ +S L
Sbjct: 393 EFDLTMRTPQFNYDGVENTSSFVERIFRQSGL 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,353,544
Number of Sequences: 5004
Number of extensions: 70331
Number of successful extensions: 142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)