Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15e19
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184...   222   3e-58
08_01_0900 + 8867895-8868938,8869887-8870085,8871500-8871713,887...    31   1.5  
03_02_0565 - 9484045-9484335,9484621-9484686,9484790-9484867,948...    30   1.9  
05_03_0553 - 15389376-15389499,15391167-15391576                       28   7.8  

>03_06_0508 +
           34417540-34417649,34418239-34418338,34418445-34418478,
           34418559-34418635,34418929-34419005,34419060-34419224,
           34419306-34419420,34419546-34419650
          Length = 260

 Score =  222 bits (542), Expect = 3e-58
 Identities = 113/192 (58%), Positives = 139/192 (72%), Gaps = 17/192 (8%)
 Frame = -2

Query: 822 KIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFI------------- 682
           +++LR R  KLGLGTAY+HG++ ASG+F++IMDADLSHH   I E +             
Sbjct: 69  RVLLRARPRKLGLGTAYLHGLKHASGDFVVIMDADLSHHMLEISETLEQSPLQLDSYQGY 128

Query: 681 ----KLQLKYDYDIVSGTRYKGSGGVYGWDFKRKLISRGANFLTQLMLRPGVSDLTGSFR 514
               K Q +   D+V+GTRY  +GGV+GW+  RKL SRGAN L Q +L+PG SDLTGSFR
Sbjct: 129 YTDKKKQKETGADVVTGTRYVQNGGVHGWNLMRKLTSRGANVLAQTLLQPGASDLTGSFR 188

Query: 513 LYKKEVLEKLILSCVSKGYVFQMEMIIRARQFDYSIGEVPISFVDRVYGESKLGGSEIVQ 334
           LYK+ VLE LI SCVSKGYVFQMEMI+RA +  Y I EVPI+FVDRV+G SKLGGSEIV+
Sbjct: 189 LYKRNVLEDLISSCVSKGYVFQMEMIVRATRKGYHIEEVPITFVDRVFGTSKLGGSEIVE 248

Query: 333 FAKALLYLFATT 298
           + K L+YL  TT
Sbjct: 249 YLKGLVYLLLTT 260


>08_01_0900 +
           8867895-8868938,8869887-8870085,8871500-8871713,
           8871854-8871959,8872077-8872199
          Length = 561

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
 Frame = -2

Query: 426 RQFDYSIGEVPISFVDRVYGESKLGGSEIVQF-AKALLY 313
           +Q +  IGE+P++FV +  G S+L   ++ QF AK ++Y
Sbjct: 487 KQIEPEIGEIPVAFVAKTEG-SELSEDDVKQFVAKEVIY 524


>03_02_0565 -
           9484045-9484335,9484621-9484686,9484790-9484867,
           9485005-9485157,9485271-9485356,9485445-9485551,
           9485685-9485752,9485890-9485912,9487627-9487732,
           9487772-9487899,9487989-9488065,9488126-9488131,
           9488206-9488264
          Length = 415

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -2

Query: 738 IIIMDADLSHHPKFIPEFIKLQLKYDYDIVSGTRYKGSGGVYG 610
           +I  D DL HH  F P    LQ    +   S   Y G   +YG
Sbjct: 156 MIAADYDLFHHMSFSPSLQNLQSPTFFTTRSSESYLGESSIYG 198


>05_03_0553 - 15389376-15389499,15391167-15391576
          Length = 177

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +1

Query: 559 LSQKVSSPRYELTLEVPAVDSTTPLVTSTRDNIVIIF*LEFDELWNELWMMAQIRIHYNN 738
           L Q+V SP  E   +   + + +PL+ S      + F L  +++W +LW++AQ + HY +
Sbjct: 39  LQQQVLSPYNEFVRQQYGI-TASPLLQS------VAFQLRNNQVWQQLWLVAQ-QSHYED 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,059,018
Number of Sequences: 37544
Number of extensions: 395728
Number of successful extensions: 784
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)