Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15e19
(823 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125462-6|AAD12857.2| 239|Caenorhabditis elegans Hypothetical ... 263 1e-70
U42832-5|ABA03119.1| 468|Caenorhabditis elegans Hypothetical pr... 30 1.7
U42832-4|AAA83574.4| 462|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z46794-1|CAA86782.1| 367|Caenorhabditis elegans Hypothetical pr... 28 9.3
Z36719-1|CAA85311.2| 576|Caenorhabditis elegans Hypothetical pr... 28 9.3
Y10114-1|CAA71200.1| 367|Caenorhabditis elegans histone RNA hai... 28 9.3
AL021473-1|CAA16305.1| 570|Caenorhabditis elegans Hypothetical ... 28 9.3
AB060649-1|BAB83255.1| 367|Caenorhabditis elegans histone stem-... 28 9.3
>AF125462-6|AAD12857.2| 239|Caenorhabditis elegans Hypothetical
protein Y66H1A.2 protein.
Length = 239
Score = 263 bits (644), Expect = 1e-70
Identities = 124/173 (71%), Positives = 140/173 (80%)
Frame = -2
Query: 822 KIVLRPREMKLGLGTAYIHGIQQASGNFIIIMDADLSHHPKFIPEFIKLQLKYDYDIVSG 643
KI+++PR KLGLGTAY HG+ A G FII+MDADLSHHPKFIPE I LQ KY DIV+G
Sbjct: 64 KILIKPRVGKLGLGTAYSHGLSFARGEFIILMDADLSHHPKFIPEMIALQHKYKLDIVTG 123
Query: 642 TRYKGSGGVYGWDFKRKLISRGANFLTQLMLRPGVSDLTGSFRLYKKEVLEKLILSCVSK 463
TRYK GGV GWD KRK IS+GANFL Q +L PGVSDLTGSFRLYK+++L KLI VSK
Sbjct: 124 TRYKDGGGVSGWDLKRKTISKGANFLAQFLLNPGVSDLTGSFRLYKRDILSKLIAESVSK 183
Query: 462 GYVFQMEMIIRARQFDYSIGEVPISFVDRVYGESKLGGSEIVQFAKALLYLFA 304
GYVFQMEM+ RA++ Y IGEVPISFVDR +GESKLG EIV +AK LLYLFA
Sbjct: 184 GYVFQMEMMFRAKKSGYRIGEVPISFVDRFFGESKLGSQEIVDYAKGLLYLFA 236
>U42832-5|ABA03119.1| 468|Caenorhabditis elegans Hypothetical
protein F01E11.5c protein.
Length = 468
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 228 IRQKLSHRYVFFFIIP*SKLFFFMLWQIDKVGLLRIVLFPNHRV*TL 368
+ + Y F I+ S LF +LW I L+ IVL+ N R+ T+
Sbjct: 6 VMSPVDETYTLFQILKGSALFLLVLWTIFANSLVFIVLYKNPRLQTV 52
>U42832-4|AAA83574.4| 462|Caenorhabditis elegans Hypothetical
protein F01E11.5a protein.
Length = 462
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 228 IRQKLSHRYVFFFIIP*SKLFFFMLWQIDKVGLLRIVLFPNHRV*TL 368
+ + Y F I+ S LF +LW I L+ IVL+ N R+ T+
Sbjct: 6 VMSPVDETYTLFQILKGSALFLLVLWTIFANSLVFIVLYKNPRLQTV 52
>Z75537-2|CAA99835.1| 622|Caenorhabditis elegans Hypothetical
protein F18E2.2 protein.
Length = 622
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 543 GVSDLTGSFRLYKKEVLEKLILSCVSK 463
G+ ++ G F YKKEVL+ L + VSK
Sbjct: 595 GIDEIDGDFEDYKKEVLDALGEALVSK 621
>Z74026-1|CAD56284.1| 1093|Caenorhabditis elegans Hypothetical
protein B0240.3 protein.
Length = 1093
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 188 VYNRCLTIYNNCKNPTETISSLCFFFYYTIE*TV 289
++++ + +YNNC + ++ S L + + TIE T+
Sbjct: 181 LFDKAIIVYNNCYDKSKISSFLSSYSFSTIEETI 214
>Z46794-1|CAA86782.1| 367|Caenorhabditis elegans Hypothetical
protein R06F6.1 protein.
Length = 367
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 769 SWDTA-SFWKFYYYNGCGFEPSSKVHS 692
SWDT WK Y CG EPS V++
Sbjct: 259 SWDTQIKKWKRSLYEYCGEEPSDSVNT 285
>Z36719-1|CAA85311.2| 576|Caenorhabditis elegans Hypothetical
protein C06C3.3 protein.
Length = 576
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 426 RQFDYSIGEVPISFVDRVYGESKLGGSEIV 337
R+FD I E+PI F + +S++ S IV
Sbjct: 479 RKFDVDINEIPIRFEGPMVNKSRINTSRIV 508
>Y10114-1|CAA71200.1| 367|Caenorhabditis elegans histone RNA
hairpin-binding protein protein.
Length = 367
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 769 SWDTA-SFWKFYYYNGCGFEPSSKVHS 692
SWDT WK Y CG EPS V++
Sbjct: 259 SWDTQIKKWKRSLYEYCGEEPSDSVNT 285
>AL021473-1|CAA16305.1| 570|Caenorhabditis elegans Hypothetical
protein Y20C6A.2 protein.
Length = 570
Score = 27.9 bits (59), Expect = 9.3
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = +3
Query: 159 WIVGFLQHIKCI 194
WI GF+QH+KC+
Sbjct: 215 WIKGFIQHLKCV 226
>AB060649-1|BAB83255.1| 367|Caenorhabditis elegans histone
stem-loop binding proteinCDL-1 protein.
Length = 367
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 769 SWDTA-SFWKFYYYNGCGFEPSSKVHS 692
SWDT WK Y CG EPS V++
Sbjct: 259 SWDTQIKKWKRSLYEYCGEEPSDSVNT 285
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,080,354
Number of Sequences: 27780
Number of extensions: 378862
Number of successful extensions: 760
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -