Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15e18
(343 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134... 30 0.55
05_06_0102 - 25589011-25589181,25589269-25589496,25589589-255899... 29 0.95
04_03_0782 + 19600510-19600771,19601192-19601293,19601439-196015... 29 1.3
11_06_0711 - 26508228-26508488,26508970-26509084,26509179-265094... 27 2.9
11_06_0249 + 21697863-21697923,21698119-21698128,21698160-216987... 27 5.1
09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800 27 5.1
04_04_1031 - 30254665-30255794,30256181-30257036 27 5.1
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598... 26 6.7
07_01_0495 + 3722319-3722517,3723325-3723482,3723652-3723929,372... 26 6.7
05_03_0667 + 16781857-16782001,16784506-16784544,16785229-167859... 26 6.7
>04_01_0126 -
1340540-1341376,1341437-1341900,1342105-1342156,
1342225-1342799,1343596-1343703,1345823-1346155,
1346783-1349306
Length = 1630
Score = 29.9 bits (64), Expect = 0.55
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +3
Query: 111 FPQQDNIFVSHTTKHNYRLPLRVNLLFITINTIPLLVVRHVTSVVIIYLSKYLRVVCIKV 290
+ + +F S++ KH+ +L V +L + I + +L++ V + +++ SKYLR+ KV
Sbjct: 571 YNMESTVFRSYS-KHHRKL---VVVLAVPIASTVILLI-FVGVMFMLWKSKYLRIDATKV 625
Query: 291 GTAL 302
GTA+
Sbjct: 626 GTAV 629
>05_06_0102 -
25589011-25589181,25589269-25589496,25589589-25589933,
25590406-25590777,25590957-25591049,25591150-25591401,
25592019-25593224
Length = 888
Score = 29.1 bits (62), Expect = 0.95
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 100 QVYLRVLKDLVHFWDNYDGAAFY 32
Q+ L L+HFWD +DG Y
Sbjct: 561 QIACSTLDGLIHFWDPFDGLLMY 583
>04_03_0782 +
19600510-19600771,19601192-19601293,19601439-19601534,
19601625-19601717,19601814-19601893,19602000-19602281,
19602624-19602751,19603134-19603503
Length = 470
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 322 SLPPHCDSAVPTLMQTTRKYLDKYIITTDV 233
SL CD+ + + + T +++DKY +T DV
Sbjct: 261 SLSSACDTVMTQVARETSRFVDKYDVTLDV 290
>11_06_0711 -
26508228-26508488,26508970-26509084,26509179-26509451,
26509629-26510197,26510489-26510597,26511002-26511544,
26511645-26511763,26511893-26512120,26512199-26512315,
26512410-26512506,26513169-26513569
Length = 943
Score = 27.5 bits (58), Expect = 2.9
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -3
Query: 155 VLRGVAYKNIVLLREGCNTSLLAGVKGPRTFLG*LRWRSILFGG 24
V+RGV Y+N +L R GC + GP T++ WR L G
Sbjct: 195 VMRGVCYENAMLCRVGCPH---LEIVGPVTYM----WRPFLREG 231
>11_06_0249 +
21697863-21697923,21698119-21698128,21698160-21698766,
21699011-21699090,21699182-21699263,21699357-21699428,
21700128-21700406
Length = 396
Score = 26.6 bits (56), Expect = 5.1
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 72 RSFNTRK*TCITSFPQQDNIFVSHTTK--HNYRLPLRVNLLFI 194
+SFN + +T P DNI VS T H +P VN++ +
Sbjct: 34 QSFNEELDSTVTITPASDNIDVSDDTSVPHPSEVPATVNVVLV 76
>09_02_0493 - 9869283-9870001,9870142-9870352,9871639-9871800
Length = 363
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 83 HPQVNLYYILPATRQYFCKPHHEAQLSSPF 172
HP V + PA+ C PHH L +PF
Sbjct: 162 HPAV--IFTPPASNNIPCAPHHHYMLHAPF 189
>04_04_1031 - 30254665-30255794,30256181-30257036
Length = 661
Score = 26.6 bits (56), Expect = 5.1
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = -1
Query: 313 PHCDSAVPTLMQTTRKYLD-KYIITTDVT*RTT--SNGIVLI 197
PH + V TL+Q T Y+D +Y T+ +T ++ S G+VLI
Sbjct: 502 PHNQTHVTTLVQGTLGYMDPEYFQTSQLTEKSDVYSFGVVLI 543
>09_02_0224 -
5984128-5984923,5985667-5986718,5986800-5987776,
5988427-5989228,5990966-5991016,5992391-5993464,
5994458-5994706
Length = 1666
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 6/25 (24%)
Frame = -1
Query: 121 CCGKDVIQVY------LRVLKDLVH 65
CCG +V+QVY L++ KD++H
Sbjct: 451 CCGNEVLQVYEKSQGTLKIPKDILH 475
>07_01_0495 +
3722319-3722517,3723325-3723482,3723652-3723929,
3723946-3724474
Length = 387
Score = 26.2 bits (55), Expect = 6.7
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = -1
Query: 319 LPPHCDSAVPTLMQTTRKYLD-KYIITTDVT*RTTSNGIVLIVINNKFTRK 170
LPP + + T +Q T +YLD +Y++T +T ++ +IV+ TRK
Sbjct: 311 LPPTDEIEIATWVQGTCEYLDPEYLMTRQLTDKSDVYSFGVIVL-ELLTRK 360
>05_03_0667 +
16781857-16782001,16784506-16784544,16785229-16785910,
16786003-16786087,16786747-16786888,16787391-16787575,
16788011-16788143,16788317-16788405,16788530-16788604,
16789060-16789173,16789264-16789305
Length = 576
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -1
Query: 121 CCGKDVIQVYLRVLKDLVHFWDNYDGAAFYLAVINMC 11
CCG D + + +L+D++ + D DG ++ I C
Sbjct: 370 CCGSDYLDLKELILEDII-WVDEIDGLLNSISYIEAC 405
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,788,626
Number of Sequences: 37544
Number of extensions: 182685
Number of successful extensions: 433
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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