Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15e18
         (343 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D87444-1|BAA13385.2|  692|Homo sapiens KIAA0255 protein.               29   2.9  
BC022850-1|AAH22850.1|  625|Homo sapiens transmembrane 9 superfa...    29   2.9  
BC021107-1|AAH21107.1|  625|Homo sapiens transmembrane 9 superfa...    29   2.9  
AL049539-3|CAB75607.2|  625|Homo sapiens transmembrane 9 superfa...    29   2.9  
AK126534-1|BAC86581.1|  528|Homo sapiens protein ( Homo sapiens ...    29   2.9  
AB020807-1|BAA78631.1|  796|Homo sapiens TLR6 protein.                 29   3.8  
BC066650-1|AAH66650.1|  874|Homo sapiens coatomer protein comple...    28   6.6  
AF100756-1|AAD43020.1|  874|Homo sapiens coat protein gamma-cop ...    28   6.6  
AB047846-1|BAB17657.1|  874|Homo sapiens gamma1-COP protein.           28   6.6  
U88540-1|AAC34137.1|  786|Homo sapiens Toll-like receptor 1 prot...    28   8.7  
CR533562-1|CAG38593.1|  786|Homo sapiens TLR1 protein.                 28   8.7  
BC109094-1|AAI09095.1|  786|Homo sapiens toll-like receptor 1 pr...    28   8.7  
BC089403-1|AAH89403.1|  786|Homo sapiens toll-like receptor 1 pr...    28   8.7  
AY686882-1|AAW67363.1|  128|Homo sapiens random intestinal-homin...    28   8.7  

>D87444-1|BAA13385.2|  692|Homo sapiens KIAA0255 protein.
          Length = 692

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
 Frame = -1

Query: 151 FVVWLTKILSCCGKDVIQVYLRV-LKDLVHFWDNY---DGAAFYLAVINMCFY 5
           F+V++  ++SC    ++ VY ++  +D   +W N+    G+AFY+ V  + ++
Sbjct: 588 FLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYF 640


>BC022850-1|AAH22850.1|  625|Homo sapiens transmembrane 9
           superfamily protein member 4 protein.
          Length = 625

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
 Frame = -1

Query: 151 FVVWLTKILSCCGKDVIQVYLRV-LKDLVHFWDNY---DGAAFYLAVINMCFY 5
           F+V++  ++SC    ++ VY ++  +D   +W N+    G+AFY+ V  + ++
Sbjct: 521 FLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYF 573


>BC021107-1|AAH21107.1|  625|Homo sapiens transmembrane 9
           superfamily protein member 4 protein.
          Length = 625

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
 Frame = -1

Query: 151 FVVWLTKILSCCGKDVIQVYLRV-LKDLVHFWDNY---DGAAFYLAVINMCFY 5
           F+V++  ++SC    ++ VY ++  +D   +W N+    G+AFY+ V  + ++
Sbjct: 521 FLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYF 573


>AL049539-3|CAB75607.2|  625|Homo sapiens transmembrane 9
           superfamily protein member 4 protein.
          Length = 625

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
 Frame = -1

Query: 151 FVVWLTKILSCCGKDVIQVYLRV-LKDLVHFWDNY---DGAAFYLAVINMCFY 5
           F+V++  ++SC    ++ VY ++  +D   +W N+    G+AFY+ V  + ++
Sbjct: 521 FLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYF 573


>AK126534-1|BAC86581.1|  528|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44570 fis, clone UTERU3011063, highly  similar
           to Transmembrane 9 superfamily protein member 4. ).
          Length = 528

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
 Frame = -1

Query: 151 FVVWLTKILSCCGKDVIQVYLRV-LKDLVHFWDNY---DGAAFYLAVINMCFY 5
           F+V++  ++SC    ++ VY ++  +D   +W N+    G+AFY+ V  + ++
Sbjct: 424 FLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYF 476


>AB020807-1|BAA78631.1|  796|Homo sapiens TLR6 protein.
          Length = 796

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 153 HNYRLPLRVNLLFITINTIPLLVVRHVTSVVI-IYLSKYLRVVC 281
           H   L   + LL +TI    L++   VTS+ I + L  YLR+VC
Sbjct: 576 HMSELSCNITLLIVTIGATMLVLAVTVTSLCIYLDLPWYLRMVC 619


>BC066650-1|AAH66650.1|  874|Homo sapiens coatomer protein complex,
           subunit gamma protein.
          Length = 874

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 163 R*LCFVVWLTKILSCCGKDVIQVYLRVLKDLVHFWDNYDGAA 38
           R +C++    K +SC  +DVI V   + KD+    DNY G A
Sbjct: 85  RRMCYLT--IKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGPA 124


>AF100756-1|AAD43020.1|  874|Homo sapiens coat protein gamma-cop
           protein.
          Length = 874

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 163 R*LCFVVWLTKILSCCGKDVIQVYLRVLKDLVHFWDNYDGAA 38
           R +C++    K +SC  +DVI V   + KD+    DNY G A
Sbjct: 85  RRMCYLT--IKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGPA 124


>AB047846-1|BAB17657.1|  874|Homo sapiens gamma1-COP protein.
          Length = 874

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -1

Query: 163 R*LCFVVWLTKILSCCGKDVIQVYLRVLKDLVHFWDNYDGAA 38
           R +C++    K +SC  +DVI V   + KD+    DNY G A
Sbjct: 85  RRMCYLT--IKEMSCIAEDVIIVTSSLTKDMTGKEDNYRGPA 124


>U88540-1|AAC34137.1|  786|Homo sapiens Toll-like receptor 1
           protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 153 HNYRLPLRVNLLFITINTIPLLVVRHVTSVVI-IYLSKYLRVVC 281
           H   L   + LL +TI    L++   VTS+ I + L  YLR+VC
Sbjct: 571 HMSELSCNITLLIVTIVATMLVLAVTVTSLCIYLDLPWYLRMVC 614


>CR533562-1|CAG38593.1|  786|Homo sapiens TLR1 protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 153 HNYRLPLRVNLLFITINTIPLLVVRHVTSVVI-IYLSKYLRVVC 281
           H   L   + LL +TI    L++   VTS+ I + L  YLR+VC
Sbjct: 571 HMSELSCNITLLIVTIVATMLVLAVTVTSLCIYLDLPWYLRMVC 614


>BC109094-1|AAI09095.1|  786|Homo sapiens toll-like receptor 1
           protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 153 HNYRLPLRVNLLFITINTIPLLVVRHVTSVVI-IYLSKYLRVVC 281
           H   L   + LL +TI    L++   VTS+ I + L  YLR+VC
Sbjct: 571 HMSELSCNITLLIVTIVATMLVLAVTVTSLCIYLDLPWYLRMVC 614


>BC089403-1|AAH89403.1|  786|Homo sapiens toll-like receptor 1
           protein.
          Length = 786

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 153 HNYRLPLRVNLLFITINTIPLLVVRHVTSVVI-IYLSKYLRVVC 281
           H   L   + LL +TI    L++   VTS+ I + L  YLR+VC
Sbjct: 571 HMSELSCNITLLIVTIVATMLVLAVTVTSLCIYLDLPWYLRMVC 614


>AY686882-1|AAW67363.1|  128|Homo sapiens random intestinal-homing
           antibody heavy chain variable region protein.
          Length = 128

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +3

Query: 126 NIFVSHTTKHNYRLPLRVNLLFITINTIPLLVVRHVTS 239
           NIF S TTK+N  L  RV +L  T      L +R VT+
Sbjct: 54  NIFYSGTTKYNPSLKSRVTILVDTSEKQVSLRLRSVTA 91


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,026,924
Number of Sequences: 237096
Number of extensions: 1045817
Number of successful extensions: 2049
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2045
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1910415606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)