Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15e18
         (343 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70266-4|CAA94206.3|  534|Caenorhabditis elegans Hypothetical pr...    28   1.5  
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p...    28   2.0  
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr...    28   2.0  
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr...    28   2.0  
L23648-11|AAA28027.2|  244|Caenorhabditis elegans Hypothetical p...    28   2.0  
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.      28   2.0  
Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical pr...    27   3.5  
Z35663-2|CAA84735.2|  335|Caenorhabditis elegans Hypothetical pr...    27   4.7  
AC199169-14|ABO33249.1|  389|Caenorhabditis elegans Hypothetical...    26   6.1  
AC024882-14|AAF60927.1|  360|Caenorhabditis elegans Hypothetical...    26   6.1  
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ...    26   6.1  
Z98866-11|CAB11564.2|  335|Caenorhabditis elegans Hypothetical p...    26   8.1  
Z75529-2|CAA99783.1|  755|Caenorhabditis elegans Hypothetical pr...    26   8.1  
U62896-1|AAB17868.1|  335|Caenorhabditis elegans PIE-1 protein.        26   8.1  

>Z70266-4|CAA94206.3|  534|Caenorhabditis elegans Hypothetical
           protein C40C9.2 protein.
          Length = 534

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/53 (22%), Positives = 29/53 (54%)
 Frame = +3

Query: 150 KHNYRLPLRVNLLFITINTIPLLVVRHVTSVVIIYLSKYLRVVCIKVGTALSQ 308
           +HN+ +P+  + +   +    ++   +V  VV+  L+KY++  C+++    SQ
Sbjct: 426 QHNHLMPVAPSEMTPRVTYSKVMAESYVEDVVMTELNKYMQKACLELKNISSQ 478


>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
            protein C47D12.1c protein.
          Length = 4053

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 172  KGRR*LCFVVWLTKILSCCGKDVIQVYLRVLKDLVH 65
            K R+ +  ++WL+K L+ CG    +V  RV+K  +H
Sbjct: 3318 KARKPIAKILWLSKHLNACGSH--EVMNRVIKKQLH 3351


>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
            C47D12.1b protein.
          Length = 4061

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 172  KGRR*LCFVVWLTKILSCCGKDVIQVYLRVLKDLVH 65
            K R+ +  ++WL+K L+ CG    +V  RV+K  +H
Sbjct: 3329 KARKPIAKILWLSKHLNACGSH--EVMNRVIKKQLH 3362


>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
            C47D12.1a protein.
          Length = 4064

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 172  KGRR*LCFVVWLTKILSCCGKDVIQVYLRVLKDLVH 65
            K R+ +  ++WL+K L+ CG    +V  RV+K  +H
Sbjct: 3329 KARKPIAKILWLSKHLNACGSH--EVMNRVIKKQLH 3362


>L23648-11|AAA28027.2|  244|Caenorhabditis elegans Hypothetical
           protein F44B9.9 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -1

Query: 157 LCFVVWLTKILSCCGKDVIQVYLRVLKDLVHFWDNYDGAA 38
           +C V  L  + SCC ++VI + L        FW+++D  A
Sbjct: 89  ICLVFSLKSLFSCCFENVIDIILART-----FWEDFDAPA 123


>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
          Length = 4064

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 172  KGRR*LCFVVWLTKILSCCGKDVIQVYLRVLKDLVH 65
            K R+ +  ++WL+K L+ CG    +V  RV+K  +H
Sbjct: 3329 KARKPIAKILWLSKHLNACGSH--EVMNRVIKKQLH 3362


>Z81054-8|CAB02886.3|  341|Caenorhabditis elegans Hypothetical
           protein F01D4.7 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 108 SFPQQDNIFVSHTTKHNYRLPLRVNLLFITINTIPLLVVRH 230
           ++PQ   +  S ++K      LR+N +FITIN + +L + H
Sbjct: 173 NYPQMSAMATSPSSK------LRINYIFITINVLNVLTLMH 207


>Z92972-1|CAB07483.1|  283|Caenorhabditis elegans Hypothetical
           protein T19C9.1 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/44 (27%), Positives = 28/44 (63%)
 Frame = -1

Query: 157 LCFVVWLTKILSCCGKDVIQVYLRVLKDLVHFWDNYDGAAFYLA 26
           L + ++++K L C   D++ +Y+R+  D+V+ +  +   A+Y+A
Sbjct: 26  LLYSIFVSKKL-CRKPDLVLIYIRISVDMVYSFSAFLIQAYYIA 68


>Z35663-2|CAA84735.2|  335|Caenorhabditis elegans Hypothetical
           protein T04A8.2 protein.
          Length = 335

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 114 PQQDNIFVSHTTKHNYRLPLRVNLLFITINTIPLLVVRHVTSVVIIYLSKYLRVV--CIK 287
           P    I++ +  K  +    R  L+FITI  +  +V   V    ++ L K LR V   + 
Sbjct: 181 PTFGGIYMEYIKKVAWASQSRFQLIFITIALLFTIVCTSVIFYTLVMLPKRLRNVERTLS 240

Query: 288 VGTA 299
           +GTA
Sbjct: 241 LGTA 244


>AC199169-14|ABO33249.1|  389|Caenorhabditis elegans Hypothetical
           protein F38A1.1 protein.
          Length = 389

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 16/71 (22%), Positives = 35/71 (49%)
 Frame = -1

Query: 247 ITTDVT*RTTSNGIVLIVINNKFTRKGRR*LCFVVWLTKILSCCGKDVIQVYLRVLKDLV 68
           IT + + + T NG +L   +N +  +  +   +  +  K+  C G  + +  +RV + +V
Sbjct: 201 ITEENSCKPTENGTILFAFSNDYGAQTVK-KAWDGYPFKVTPCSGYAIARFDVRVEESIV 259

Query: 67  HFWDNYDGAAF 35
           +F D  D  ++
Sbjct: 260 YFTDFGDAQSY 270


>AC024882-14|AAF60927.1|  360|Caenorhabditis elegans Hypothetical
           protein Y9C9A.1 protein.
          Length = 360

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 174 RVNLLFITINTIPLLVVRHVTSVVIIYLSKYLRVVCIKV 290
           ++NL   +INT PLL +     V+I  L   + ++C KV
Sbjct: 6   KLNLSEFSINTEPLLTISSEMIVLITLLLFAIPILCNKV 44


>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
            protein Y54E10A.11 protein.
          Length = 1446

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 313  PHCDSAVPTLMQTTRKYLDKYIITTDVT*R 224
            PH  S  P L   T  YL+ +++ TD T R
Sbjct: 973  PHSFSENPLLEALTTLYLELFVVLTDATKR 1002


>Z98866-11|CAB11564.2|  335|Caenorhabditis elegans Hypothetical
           protein Y49E10.14 protein.
          Length = 335

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 83  HPQVNLYYILPATRQYFCKPHHEAQLSSPFTSEFV 187
           HPQ    + LP    YF  P  +AQ  +PF  +++
Sbjct: 239 HPQHQQQF-LPFPMPYFLAPPPQAQQGAPFPVQYI 272


>Z75529-2|CAA99783.1|  755|Caenorhabditis elegans Hypothetical
           protein C44H9.2 protein.
          Length = 755

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 319 LPPHCDSAVPTLMQ 278
           LPPHCDSA+  L++
Sbjct: 723 LPPHCDSALSGLLK 736


>U62896-1|AAB17868.1|  335|Caenorhabditis elegans PIE-1 protein.
          Length = 335

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 83  HPQVNLYYILPATRQYFCKPHHEAQLSSPFTSEFV 187
           HPQ    + LP    YF  P  +AQ  +PF  +++
Sbjct: 239 HPQHQQQF-LPFPMPYFLAPPPQAQQGAPFPVQYI 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,704,829
Number of Sequences: 27780
Number of extensions: 176699
Number of successful extensions: 484
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)