Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15e12
         (842 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    37   0.003
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    28   1.4  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   5.8  

>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
 Frame = -1

Query: 830 LEPGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPL--GATPVYLPPLPVGH-----STTV 672
           L PG  F + W I NT  + WP    +   GG+ L  G  P   P     H     + TV
Sbjct: 289 LSPGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGEDVNFTV 348

Query: 671 TLKLVAPSTSGTHKSFFHLVTDKG 600
            LK+   S      +FF++ +D G
Sbjct: 349 ALKVPEKSNKEIFTAFFNICSDDG 372


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/39 (30%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 781 EQNNGQVVVD*YKLVVNLLALHLFIYHP-FLLDIPQQLH 668
           E+++G ++V  +++V N+L  +   YHP  ++D+   LH
Sbjct: 516 ERSSGNILVVSHRIVSNILMTYFLNYHPEDIIDVGLPLH 554


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1183

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +2

Query: 212  YKYFIKNKKHCMCNSIE*KATK*ILKL*HTILANLSTYLIKIQK 343
            Y Y    +K C  N +  KA + +  L   I+  L  Y+++++K
Sbjct: 980  YDYASDKRKFCKENYLREKALEEVTNLRKQIIGLLKRYMVRVEK 1023


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,101,861
Number of Sequences: 5004
Number of extensions: 60070
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)