Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15e12
         (842 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0448 - 23001579-23001683,23001783-23002382,23002479-230026...    54   1e-07
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442...    49   5e-06
06_01_0778 + 5816588-5816885,5817554-5817615,5818764-5818905,581...    30   2.7  
07_03_0033 + 12656255-12656297,12657402-12657408,12657484-126580...    29   4.6  

>02_04_0448 -
           23001579-23001683,23001783-23002382,23002479-23002628,
           23002788-23003015,23003188-23003302,23003392-23004659,
           23006621-23006692
          Length = 845

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
 Frame = -1

Query: 830 LEPGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPLGA---TPVYLPP--LPVGHSTTVTL 666
           + P   F + W + N G+  WP   +LI  GG+        P+ +P    PV     V +
Sbjct: 518 MAPSTPFTKIWRMHNNGSIMWPLGTQLIWVGGDQFALQTYVPLEIPVDGFPVDQEIDVAV 577

Query: 665 KLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVE 558
             VAP+  G + S++ L +  G++ G  +WV + VE
Sbjct: 578 DFVAPARPGRYISYWRLASPSGQKFGQRVWVHIQVE 613


>04_04_0239 -
           23843235-23843243,23843334-23844047,23844138-23844287,
           23844389-23844601,23844697-23844811,23844919-23846300,
           23847217-23847279
          Length = 881

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
 Frame = -1

Query: 842 PTGS-LEPGARFDQNWSIVNTGTEQWP-GCCRLIQAGGEPLGATP-----VYLPPLPVGH 684
           P G+ + P   F + W I N G+  WP G C L   GG            + +   P+  
Sbjct: 543 PDGTVMAPSTPFTKIWRIHNNGSSMWPYGTC-LTWVGGHLFARNSSVKLGISVDGFPIDQ 601

Query: 683 STTVTLKLVAPSTSGTHKSFFHLVTDKGEQIGDTLWVEVTVESEMTMALVEQLAAL 516
              V +  V P+  G + S++ L +  G+  G  +WV + VE  +  +  +Q AA+
Sbjct: 602 EIDVGVDFVTPAKPGGYVSYWRLASPTGQMFGQRVWVFIQVEHPVKTSSNKQSAAI 657


>06_01_0778 +
           5816588-5816885,5817554-5817615,5818764-5818905,
           5819969-5820064,5820147-5820266,5820401-5820663,
           5821507-5821617
          Length = 363

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 806 QNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVYLPPLPVGHST 678
           +NW  V+ G ++    CR   A      A PV  PP+P G ST
Sbjct: 33  KNWRPVSAGHQEPTSACRQELAAAAAAAALPV--PPVPRGSST 73


>07_03_0033 +
           12656255-12656297,12657402-12657408,12657484-12658016,
           12658106-12658224,12658329-12658688,12659602-12659784
          Length = 414

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = -3

Query: 333 LIR*VLKLASIVCYNFKIYLVAFYSIELHMQCFLFLMKYLYSQ*NPFIQNKKLS 172
           L+R  L+L   V      Y+      ELH+  +     Y YS  N FI ++K+S
Sbjct: 88  LLRNELELCIPVINAIDFYMDGKLDSELHLMAYYLNPYYFYSNRNGFISSEKIS 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,310,313
Number of Sequences: 37544
Number of extensions: 344695
Number of successful extensions: 785
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)