Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15e12
         (842 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069316-1|AAL39461.1|  303|Drosophila melanogaster LD03052p pro...    34   0.28 
AE014298-2564|AAO41692.1|  303|Drosophila melanogaster CG5445-PD...    34   0.28 
AE014298-2563|AAN09441.1|  303|Drosophila melanogaster CG5445-PC...    34   0.28 
AE014298-2562|AAF48724.1|  303|Drosophila melanogaster CG5445-PB...    34   0.28 
AE014298-2561|AAF48723.1|  303|Drosophila melanogaster CG5445-PA...    34   0.28 

>AY069316-1|AAL39461.1|  303|Drosophila melanogaster LD03052p
           protein.
          Length = 303

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = -1

Query: 806 QNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGTHKS 627
           Q + + N GTE+WP  C L      P+    + +P L  G +  +   ++ P+   T   
Sbjct: 193 QAFQLQNDGTERWPNNCYLT----SPIQTQRINVPALRPGETCDILADMM-PTQPPT--- 244

Query: 626 FFHLVTDKGEQIGDTLWV 573
            + L T  G   GD +W+
Sbjct: 245 MWRLCTSNGWYFGDAIWM 262


>AE014298-2564|AAO41692.1|  303|Drosophila melanogaster CG5445-PD,
           isoform D protein.
          Length = 303

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = -1

Query: 806 QNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGTHKS 627
           Q + + N GTE+WP  C L      P+    + +P L  G +  +   ++ P+   T   
Sbjct: 193 QAFQLQNDGTERWPNNCYLT----SPIQTQRINVPALRPGETCDILADMM-PTQPPT--- 244

Query: 626 FFHLVTDKGEQIGDTLWV 573
            + L T  G   GD +W+
Sbjct: 245 MWRLCTSNGWYFGDAIWM 262


>AE014298-2563|AAN09441.1|  303|Drosophila melanogaster CG5445-PC,
           isoform C protein.
          Length = 303

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = -1

Query: 806 QNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGTHKS 627
           Q + + N GTE+WP  C L      P+    + +P L  G +  +   ++ P+   T   
Sbjct: 193 QAFQLQNDGTERWPNNCYLT----SPIQTQRINVPALRPGETCDILADMM-PTQPPT--- 244

Query: 626 FFHLVTDKGEQIGDTLWV 573
            + L T  G   GD +W+
Sbjct: 245 MWRLCTSNGWYFGDAIWM 262


>AE014298-2562|AAF48724.1|  303|Drosophila melanogaster CG5445-PB,
           isoform B protein.
          Length = 303

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = -1

Query: 806 QNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGTHKS 627
           Q + + N GTE+WP  C L      P+    + +P L  G +  +   ++ P+   T   
Sbjct: 193 QAFQLQNDGTERWPNNCYLT----SPIQTQRINVPALRPGETCDILADMM-PTQPPT--- 244

Query: 626 FFHLVTDKGEQIGDTLWV 573
            + L T  G   GD +W+
Sbjct: 245 MWRLCTSNGWYFGDAIWM 262


>AE014298-2561|AAF48723.1|  303|Drosophila melanogaster CG5445-PA,
           isoform A protein.
          Length = 303

 Score = 33.9 bits (74), Expect = 0.28
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = -1

Query: 806 QNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVYLPPLPVGHSTTVTLKLVAPSTSGTHKS 627
           Q + + N GTE+WP  C L      P+    + +P L  G +  +   ++ P+   T   
Sbjct: 193 QAFQLQNDGTERWPNNCYLT----SPIQTQRINVPALRPGETCDILADMM-PTQPPT--- 244

Query: 626 FFHLVTDKGEQIGDTLWV 573
            + L T  G   GD +W+
Sbjct: 245 MWRLCTSNGWYFGDAIWM 262


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,072,848
Number of Sequences: 53049
Number of extensions: 637548
Number of successful extensions: 1409
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4024321392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)