Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15e12
(842 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024089-4|AAK09073.2| 239|Caenorhabditis elegans Hypothetical ... 49 5e-06
Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical p... 31 0.78
Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical pr... 31 0.78
U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine tr... 31 0.78
AL117193-17|CAJ76959.1| 242|Caenorhabditis elegans Hypothetical... 30 2.4
U88166-3|AAO44910.1| 160|Caenorhabditis elegans Collagen protei... 29 4.1
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 28 9.5
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 28 9.5
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 28 9.5
>AC024089-4|AAK09073.2| 239|Caenorhabditis elegans Hypothetical
protein C36E6.2 protein.
Length = 239
Score = 48.8 bits (111), Expect = 5e-06
Identities = 26/105 (24%), Positives = 46/105 (43%)
Frame = -1
Query: 824 PGARFDQNWSIVNTGTEQWPGCCRLIQAGGEPLGATPVYLPPLPVGHSTTVTLKLVAPST 645
P + F W +VN G +WP RL G+P+ L S + +++ P+
Sbjct: 99 PNSTFFCGWRVVNDGRFRWPDGTRLAFVDGDPIDYEVWKDTVLDPDQSENIEIRISCPAE 158
Query: 644 SGTHKSFFHLVTDKGEQIGDTLWVEVTVESEMTMALVEQLAALPV 510
G K+ F VT + G+++WV + V +++A P+
Sbjct: 159 MGDFKARFQFVTPQNFFFGESIWVIIRVRPLTEAEAAMEVSAQPM 203
>Z83236-11|CAB05785.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 31.5 bits (68), Expect = 0.78
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = -1
Query: 602 GEQIGDTLWVEVTVESEMTMALVEQLAALPVPSSRLEELLTQTQSQDDQM 453
G +GD W +T++ MT+ ++ + +P P + LE+ Q +++
Sbjct: 47 GRTLGDDDWEGITIKENMTIMMMGSVGEIPKPPTVLEKKQANRDKQAEEI 96
>Z81468-3|CAB03876.1| 489|Caenorhabditis elegans Hypothetical
protein C13B4.2 protein.
Length = 489
Score = 31.5 bits (68), Expect = 0.78
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = -1
Query: 602 GEQIGDTLWVEVTVESEMTMALVEQLAALPVPSSRLEELLTQTQSQDDQM 453
G +GD W +T++ MT+ ++ + +P P + LE+ Q +++
Sbjct: 47 GRTLGDDDWEGITIKENMTIMMMGSVGEIPKPPTVLEKKQANRDKQAEEI 96
>U32223-1|AAA74956.1| 489|Caenorhabditis elegans tRNA-guanine
transglycosylase protein.
Length = 489
Score = 31.5 bits (68), Expect = 0.78
Identities = 12/50 (24%), Positives = 26/50 (52%)
Frame = -1
Query: 602 GEQIGDTLWVEVTVESEMTMALVEQLAALPVPSSRLEELLTQTQSQDDQM 453
G +GD W +T++ MT+ ++ + +P P + LE+ Q +++
Sbjct: 47 GRTLGDDDWEGITIKENMTIMMMGSVGEIPKPPTVLEKKQANRDKQAEEI 96
>AL117193-17|CAJ76959.1| 242|Caenorhabditis elegans Hypothetical
protein Y105C5A.8a protein.
Length = 242
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 514 QCLAVDWKNCLHRHNHKTIKCVERLWKLEI 425
QC + K+C H + + C E WK EI
Sbjct: 49 QCTCDEMKDCYHSSKLQALDCFETCWKSEI 78
>U88166-3|AAO44910.1| 160|Caenorhabditis elegans Collagen protein
53 protein.
Length = 160
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 670 VTVVECPTGRGGK*TGVAPRGS 735
V + ECPTGR G+ G P+GS
Sbjct: 2 VCIRECPTGRPGREGGDGPKGS 23
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +3
Query: 471 LCLCKQFFQSTARHWKCC*LFDKCHSHLRFNCDFNPKCITYLFAFIC 611
+C C F S+ H C D+C+ R C N C+ + + C
Sbjct: 1232 VCECPSGFTSSGAHGDCDTRIDECY---RGRCSNNSTCVAFENTYQC 1275
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +3
Query: 471 LCLCKQFFQSTARHWKCC*LFDKCHSHLRFNCDFNPKCITYLFAFIC 611
+C C F S+ H C D+C+ R C N C+ + + C
Sbjct: 1232 VCECPSGFTSSGAHGDCDTRIDECY---RGRCSNNSTCVAFENTYQC 1275
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 697 RGGK*TGVAPRGSPPACINLQQPGHCS 777
R G+ TG RG P C + Q+ GH S
Sbjct: 154 RSGRRTGRRGRGGPGHCFHCQEHGHIS 180
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +3
Query: 471 LCLCKQFFQSTARHWKCC*LFDKCHSHLRFNCDFNPKCITYLFAFIC 611
+C C F S+ H C D+C+ R C N C+ + + C
Sbjct: 1232 VCECPSGFTSSGAHGDCDTRIDECY---RGRCSNNSTCVAFENTYQC 1275
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,079,564
Number of Sequences: 27780
Number of extensions: 351845
Number of successful extensions: 930
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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