Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15e12
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              27   0.22 
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              27   0.22 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    26   0.50 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.5  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   2.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.2  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 483 YTDTITRRSNVLKDSGNWKYNIV 415
           Y + I ++ N++ +SGN+K NIV
Sbjct: 62  YNECILKQFNIVDESGNFKENIV 84


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 27.1 bits (57), Expect = 0.22
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 483 YTDTITRRSNVLKDSGNWKYNIV 415
           Y + I ++ N++ +SGN+K NIV
Sbjct: 62  YNECILKQFNIVDESGNFKENIV 84


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
 Frame = +1

Query: 634 WVPEVEGATNFNVTV----VECPTGRGGK*TGVAPR 729
           W+ EV   T  N  +    +EC  G+G K  G+AP+
Sbjct: 5   WIDEVALVTGANSGIGKCLIECLVGKGMKVIGIAPQ 40


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -3

Query: 657  SPFNFWNP 634
            +PFNFWNP
Sbjct: 1159 TPFNFWNP 1166


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 133 YVILLI*FSILKITQLFVLYERISLRIQ 216
           Y +  I F ++ +  + VLY RI LRIQ
Sbjct: 206 YQLSCILFFLIPMVFIAVLYIRIGLRIQ 233


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = -3

Query: 753 INTSWW*TSWRYTCLFTTPSCWTFHNSYI 667
           ++  W    WR  C F      TFH   I
Sbjct: 79  LDVDWLHNIWRPDCFFKNAKKVTFHEMSI 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,074
Number of Sequences: 438
Number of extensions: 4578
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)