Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15e11
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 32 0.084
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce... 29 0.79
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 29 1.0
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 28 1.8
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 26 7.3
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 26 7.3
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 9.7
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 9.7
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 25 9.7
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 32.3 bits (70), Expect = 0.084
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHT 538
H +P+VC + C KRF S+EL +H R HT
Sbjct: 48 HTGEKPHVCTF----PGCAKRFSRSDELTRHARIHT 79
>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 29.1 bits (62), Expect = 0.79
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSH 541
H +P+ C++ C KRF +EL++H+R+H
Sbjct: 26 HTGEKPFECSY----PSCKKRFTRRDELIRHVRTH 56
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSH 541
H +P+VC CGKRF + L QH R H
Sbjct: 446 HTSEKPFVC-------ICGKRFSRRDNLRQHERLH 473
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -3
Query: 594 CGKRFGNSEELLQHLRS-HTAD 532
C K+F SE L +H+RS HT++
Sbjct: 428 CSKKFKRSEHLRRHIRSLHTSE 449
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 438 PTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
P++P SP S S Y P S + P S S SP A P YSP
Sbjct: 1573 PSSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSATSPSYSP 1615
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 438 PTAPLSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P ++ Y P S + P S S SP P YSP
Sbjct: 1601 PTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1643
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 438 PTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P SP S S Y P S + P S S SP P YSP
Sbjct: 1615 PTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1657
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 438 PTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P SP S S Y P S + P S S SP P YSP
Sbjct: 1622 PTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1664
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 438 PTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P SP S S Y P S + P S S SP P YSP
Sbjct: 1629 PTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1671
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 438 PTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P SP S S Y P S + P S S SP P YSP
Sbjct: 1636 PTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1678
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 438 PTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P SP S S Y P S + P S S SP P YSP
Sbjct: 1643 PTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1685
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 438 PTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P SP S S Y P S + P S S SP P YSP
Sbjct: 1650 PTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1692
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 438 PTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P SP S S Y P S + P S S SP P YSP
Sbjct: 1657 PTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1699
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 438 PTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P SP S S Y P S + P S S SP P YSP
Sbjct: 1664 PTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1706
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 438 PTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P SP S S Y P S + P S S SP P YSP
Sbjct: 1671 PTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1713
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 438 PTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P SP S S Y P S + P S S SP P YSP
Sbjct: 1678 PTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1720
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 438 PTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P SP S S Y P S + P S S SP P YSP
Sbjct: 1685 PTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1727
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 438 PTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P SP S S Y P S + P S S SP P YSP
Sbjct: 1692 PTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1734
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 438 PTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P SP S S Y P S + P S S SP P YSP
Sbjct: 1699 PTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1741
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -3
Query: 438 PTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P SP S S Y P S + P S S SP P YSP
Sbjct: 1706 PTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1748
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 594 CGKRFGNSEELLQHLRSHT 538
CGK++ L QHLR+H+
Sbjct: 30 CGKKYSRPSLLEQHLRTHS 48
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 426 LSPLSASRYHPYSKAGLPASLSASPY 349
L PLS+S HP G PAS Y
Sbjct: 312 LIPLSSSPNHPIQPIGFPASRKTPTY 337
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Frame = +2
Query: 629 GRLSWW--YGKLLAAAPCCDRAIAIAKLYF 712
G SWW Y + AAA C AIA +YF
Sbjct: 720 GYYSWWKKYNLITAAAMDCGVAIAGLFIYF 749
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -3
Query: 429 PLSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PL+P+ A + +P ++ S G PA+G SP
Sbjct: 95 PLAPIGARQPNPSIPQQFSKPINESGTGTMGPAVGELTSP 134
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/33 (30%), Positives = 14/33 (42%)
Frame = -3
Query: 801 CTGCQFSVNNHHLLMSNGSCPAGCTQCEHQKYN 703
C C ++ +L+ C GC C KYN
Sbjct: 485 CYVCHSALEEDCVLLGEIRCHIGCLSCTKCKYN 517
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,392,053
Number of Sequences: 5004
Number of extensions: 68495
Number of successful extensions: 192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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