Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15e11
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0190 - 14683965-14684345 32 0.62
07_03_0944 + 22787933-22789906 31 1.4
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 30 1.9
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 30 2.5
04_04_1247 - 32043776-32043880,32044296-32044505,32044595-320451... 29 3.3
04_01_0237 + 3072799-3073245 29 3.3
12_02_0239 - 16125105-16126025,16126966-16127415 29 4.4
09_02_0568 + 10748227-10748434,10749004-10749398 29 4.4
08_01_0382 - 3402015-3403604 29 5.8
07_03_0953 + 22860954-22861262 29 5.8
05_03_0512 + 14913356-14913769,14915907-14916032,14916129-149161... 29 5.8
04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888 29 5.8
01_05_0583 + 23420160-23420480 29 5.8
08_02_0391 - 16612929-16613867 28 7.7
02_04_0278 - 21507288-21507726,21507893-21507972,21508587-215088... 28 7.7
02_04_0192 + 20795659-20796309 28 7.7
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 28 7.7
>11_04_0190 - 14683965-14684345
Length = 126
Score = 31.9 bits (69), Expect = 0.62
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 280 RPKSLSIHG-VGRIKRSERRVEGTVW*STEA--GRETSF*VRMVSTRRKWAERRRR 438
R S +HG G+ +R +RR T W STE G E + + + +W E+RRR
Sbjct: 10 RRSSAKVHGGYGKQRRRQRRSRPTRWHSTELRDGVEMAHGDERRTPKLRWREKRRR 65
>07_03_0944 + 22787933-22789906
Length = 657
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -3
Query: 426 LSPLSASRYHPYSKAGL-PASLSASPYGAFNPALGPFYSPYAMYGQRLGAAAVHQ 265
LSP++ +R YS L P+SL+ SP+G +P P + R+GA A +
Sbjct: 498 LSPVNTNRM--YSPRALDPSSLAHSPFGGMSPRSPRTMEPTSPLSARVGAPATQR 550
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 438 PTAPLSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSPYA 304
PT+P ++ Y P S + P+S SP A++P+ P SPY+
Sbjct: 1727 PTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHAYSPS-SPRLSPYS 1770
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 438 PTAPLSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P+ ++ Y P S A P S S SP P YSP
Sbjct: 1643 PTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1685
Score = 28.7 bits (61), Expect = 5.8
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -3
Query: 462 TAGLRSAYPTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
T G + PT+P SP S S Y P S + P S S SP P YSP
Sbjct: 1586 TPGSPTYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1636
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -3
Query: 438 PTAPLSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P+ ++ Y P S P SLS SP P Y+P
Sbjct: 1643 PTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNP 1685
Score = 29.5 bits (63), Expect = 3.3
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Frame = -3
Query: 492 ILNQFNPLFTTAGLRSAYPTAPLSPLSASRYHPYSKAGLPASLS---ASPYGAFNPALGP 322
I + +P+++ L S PT+P+ ++ Y+P S A P S S SP +++P P
Sbjct: 1654 IYSPSSPIYSPTSL-SYSPTSPVYSPTSPVYNPTSSAYSPTSPSYNPTSPSYSYSPT-SP 1711
Query: 321 FYSP 310
YSP
Sbjct: 1712 SYSP 1715
Score = 29.1 bits (62), Expect = 4.4
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -3
Query: 438 PTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYS 313
PT+P SP S S Y P S + P+S+ +P A++P+ +YS
Sbjct: 1789 PTSPGYSPTSPS-YSPSSPSYNPSSVKYTPSHAYSPSSPNYYS 1830
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 438 PTAP-LSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSP 310
PT+P SP S S Y P S + P S S SP + P YSP
Sbjct: 1747 PTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSSAYSPTSPAYSP 1789
>04_04_1247 -
32043776-32043880,32044296-32044505,32044595-32045101,
32045362-32045583,32046054-32046184,32046737-32047745,
32047830-32047904,32047995-32048066,32048153-32048328,
32048494-32048646,32048739-32049234
Length = 1051
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 453 LRSAYPTAPLSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSPYAMYGQ 292
+ S+Y + PLS + P ++ + G +PA+ Y PY YGQ
Sbjct: 104 MSSSYKSRPLSLTGGNNVESTHPTVKPNTVHYNGIGFPSPAIASGYKPYVSYGQ 157
>04_01_0237 + 3072799-3073245
Length = 148
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 448 TKTGSREQWIKLI*NGRLSRCTGRWSGSVGCVA 546
T+ R +W+K +G SR WS S GC A
Sbjct: 10 TRMAGRRRWLKRRRSGACSRALSAWSRSGGCDA 42
>12_02_0239 - 16125105-16126025,16126966-16127415
Length = 456
Score = 29.1 bits (62), Expect = 4.4
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Frame = +1
Query: 490 NGRLS-RCTGRWSGSVGCVASQVL*QFLGISKPLAAVRFADDPVANVGSAQLVV------ 648
NG+LS CTG V A V + +G P+ R +D+ + +VG A+++V
Sbjct: 91 NGKLSVECTGEGVVFVEAEAD-VRIEDMG-EPPMPLFRGSDEFLCDVGDAKVIVGRPLFF 148
Query: 649 ---RQTTSGGSLL*QSHCHC 699
Q GG +L HCHC
Sbjct: 149 MQITQLKCGGFVLGTYHCHC 168
>09_02_0568 + 10748227-10748434,10749004-10749398
Length = 200
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 338 LKAPYGEALRLAGRPA 385
LKAP+G ALR AG+PA
Sbjct: 19 LKAPFGAALRSAGKPA 34
>08_01_0382 - 3402015-3403604
Length = 529
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -3
Query: 450 RSAYPTAPLSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSPY 307
+S Y AP+S Y AG P S+ PYG +G +P+
Sbjct: 365 KSDYVKAPISRHDMVEIARYLSAGPPGSIILDPYGGAMARIGSDATPF 412
>07_03_0953 + 22860954-22861262
Length = 102
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 451 KTGSREQWIKLI*NGRLSRCTGRWSGSVGC 540
+ R++W+K +G SR + WS S GC
Sbjct: 11 RMAGRQRWLKRRRSGACSRASSAWSRSGGC 40
>05_03_0512 +
14913356-14913769,14915907-14916032,14916129-14916185,
14916950-14917027,14917681-14917773
Length = 255
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 695 WQWLCHSKEPPLVVCRTTS*ADPTFATGSSANLTAASGLEIPRNCY 558
W WL KE + TT+ DP G ANL G+++ + Y
Sbjct: 179 WVWLALDKEAKKLSVETTANQDPLVTKG--ANLVPLLGIDVWEHAY 222
>04_04_0436 + 25186144-25187915,25188020-25188077,25188472-25188888
Length = 748
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Frame = -1
Query: 446 AHTRRRRSAHF---LRVDTILTQKL--VSRPASVLHHTVP--STLRSDRFILPTPCMDRD 288
+H+R RR A L VD +KL +SRP+S H VP S S + T C DR
Sbjct: 293 SHSRGRRIAGSDMQLLVDISEIEKLEMISRPSSAPHQCVPDASDTESKTALTETVCQDRI 352
Query: 287 L 285
L
Sbjct: 353 L 353
>01_05_0583 + 23420160-23420480
Length = 106
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 448 TKTGSREQWIKLI*NGRLSRCTGRWSGSVGCVA 546
T+ R +W+K +G SR + WS S GC A
Sbjct: 10 TRMAGRRRWLKRRRSGACSRASLAWSRSGGCDA 42
>08_02_0391 - 16612929-16613867
Length = 312
Score = 28.3 bits (60), Expect = 7.7
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = -3
Query: 465 TTAGLRSAYPTAPLSPLSASRYHPYSKAGLPASLSASPYGAFNPALGP 322
TTA + + T LS ++AS P SK P S SAS A P L P
Sbjct: 205 TTATVTTTTTTESLSQVTASSASPSSKEAPPPSSSAS--AATPPPLNP 250
>02_04_0278 -
21507288-21507726,21507893-21507972,21508587-21508840,
21508988-21509180
Length = 321
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 417 LSASRYHPYSKAGLPASLSASPYGAFNPALGPF 319
++A+ P AG P S SA+ +GA P GPF
Sbjct: 272 ITAAAAVPSPGAGSPPSSSAALFGARRPHFGPF 304
>02_04_0192 + 20795659-20796309
Length = 216
Score = 28.3 bits (60), Expect = 7.7
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -3
Query: 438 PTAPLSP--LSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSPYAMYGQRL 286
P PL P LS + PY+ A +PA +AS +P G +Y A +RL
Sbjct: 118 PPLPLPPSLLSRAASDPYASAVVPAEYAASGAMPPHPPPGYYYPAGAKAARRL 170
>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -3
Query: 594 CGKRFGNSEELLQHLRSHTAD 532
CGK+F + + LLQH + HT D
Sbjct: 1116 CGKKFFSHKYLLQHRKVHTDD 1136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,975,267
Number of Sequences: 37544
Number of extensions: 493920
Number of successful extensions: 1317
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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