Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15e11
(812 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49071-4|CAA88877.1| 166|Caenorhabditis elegans Hypothetical pr... 42 5e-04
Z82283-1|CAB05282.1| 354|Caenorhabditis elegans Hypothetical pr... 42 7e-04
AY046083-1|AAL02420.1| 354|Caenorhabditis elegans zinc finger p... 42 7e-04
U80952-2|AAB38094.1| 309|Caenorhabditis elegans Muscle attachme... 38 0.009
U80952-1|AAU20846.1| 315|Caenorhabditis elegans Muscle attachme... 38 0.009
AL034392-4|CAA22307.2| 203|Caenorhabditis elegans Hypothetical ... 38 0.011
AF099922-4|AAK21409.1| 497|Caenorhabditis elegans Hypothetical ... 36 0.026
Z81547-1|CAB04459.1| 354|Caenorhabditis elegans Hypothetical pr... 34 0.14
AL132860-29|CAB60505.2| 386|Caenorhabditis elegans Hypothetical... 33 0.24
AC024826-1|AAY86307.1| 221|Caenorhabditis elegans Egr (early gr... 33 0.32
Z66516-9|CAN99713.1| 455|Caenorhabditis elegans Hypothetical pr... 32 0.42
Z66516-8|CAB60308.2| 459|Caenorhabditis elegans Hypothetical pr... 32 0.42
Z50015-2|CAN99700.1| 455|Caenorhabditis elegans Hypothetical pr... 32 0.42
Z50015-1|CAB60292.2| 459|Caenorhabditis elegans Hypothetical pr... 32 0.42
L39212-1|AAC37255.1| 459|Caenorhabditis elegans transcription f... 32 0.42
AL021172-3|CAN99704.1| 455|Caenorhabditis elegans Hypothetical ... 32 0.42
AL021172-2|CAB60307.2| 459|Caenorhabditis elegans Hypothetical ... 32 0.42
Z83227-4|CAB05729.2| 336|Caenorhabditis elegans Hypothetical pr... 31 0.98
U63996-1|AAC47234.1| 336|Caenorhabditis elegans zinc finger pro... 31 0.98
AC024812-7|AAF59548.2| 419|Caenorhabditis elegans Hypothetical ... 31 0.98
Z69883-6|CAA93744.2| 461|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z36752-3|CAA85325.1| 422|Caenorhabditis elegans Hypothetical pr... 30 1.7
U39993-1|AAA81086.1| 594|Caenorhabditis elegans Hypothetical pr... 30 2.3
AF016437-1|AAB65884.2| 690|Caenorhabditis elegans Hypothetical ... 30 2.3
U41020-1|AAA82331.2| 470|Caenorhabditis elegans Hypothetical pr... 29 3.0
U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein... 29 3.0
AF101309-5|ABD94097.1| 543|Caenorhabditis elegans Hypothetical ... 29 3.0
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 29 3.0
AC006625-13|ABI18147.1| 273|Caenorhabditis elegans Abnormal che... 29 4.0
AC006625-12|AAK68272.2| 214|Caenorhabditis elegans Abnormal che... 29 4.0
AC024826-17|AAF60789.1| 662|Caenorhabditis elegans Hypothetical... 29 5.2
U40959-2|AAA81766.1| 413|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z92825-6|CAB07314.2| 435|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z79755-8|CAB02113.1| 270|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z66496-5|CAA91280.2| 507|Caenorhabditis elegans Hypothetical pr... 28 9.1
U23454-9|AAC46522.2| 249|Caenorhabditis elegans Hypothetical pr... 28 9.1
AF169201-1|AAF01678.1| 270|Caenorhabditis elegans CES-1 protein. 28 9.1
>Z49071-4|CAA88877.1| 166|Caenorhabditis elegans Hypothetical
protein T22C8.5 protein.
Length = 166
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H RP+VC+W CGKRF S++L++H R+HT +
Sbjct: 101 HTGDRPFVCDWFD----CGKRFDRSDQLIRHKRTHTKE 134
>Z82283-1|CAB05282.1| 354|Caenorhabditis elegans Hypothetical
protein T23G4.1 protein.
Length = 354
Score = 41.5 bits (93), Expect = 7e-04
Identities = 37/129 (28%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Frame = -3
Query: 642 QLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTADGXXXXXXXXXXXSILNQFNPLFT 463
Q S + CNW+ + CGK F EL H++ A + + T
Sbjct: 243 QKSAKFPCNWVDSDVPCGKVFDEENELASHVKKMHAPSPSS-----------SASSEQST 291
Query: 462 TAGLRSAYPTAPLSPLSASRYHPYSKAGLPASLSASPYG---AFNPALGPFYSPYAMYGQ 292
+ G S T + R++PY K PA + G A NP + PF S AMY
Sbjct: 292 STGKASRSSTT-----TPHRFNPYGKPVAPAPPTMQQMGMNMAMNPLVLPF-SLQAMYSN 345
Query: 291 RLGAAAVHQ 265
RL + HQ
Sbjct: 346 RLMSTVAHQ 354
>AY046083-1|AAL02420.1| 354|Caenorhabditis elegans zinc finger
protein TLP-1 protein.
Length = 354
Score = 41.5 bits (93), Expect = 7e-04
Identities = 37/129 (28%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Frame = -3
Query: 642 QLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTADGXXXXXXXXXXXSILNQFNPLFT 463
Q S + CNW+ + CGK F EL H++ A + + T
Sbjct: 243 QKSAKFPCNWVDSDVPCGKVFDEENELASHVKKMHAPSPSS-----------SASSEQST 291
Query: 462 TAGLRSAYPTAPLSPLSASRYHPYSKAGLPASLSASPYG---AFNPALGPFYSPYAMYGQ 292
+ G S T + R++PY K PA + G A NP + PF S AMY
Sbjct: 292 STGKASRSSTT-----TPHRFNPYGKPVAPAPPTMQQMGMNMAMNPLVLPF-SLQAMYSN 345
Query: 291 RLGAAAVHQ 265
RL + HQ
Sbjct: 346 RLMSTVAHQ 354
>U80952-2|AAB38094.1| 309|Caenorhabditis elegans Muscle attachment
abnormal protein1, isoform a protein.
Length = 309
Score = 37.9 bits (84), Expect = 0.009
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H +P+VC W C +F S+EL +H+R HT D
Sbjct: 248 HSGEKPFVCKW----QNCSWKFARSDELTRHMRKHTGD 281
>U80952-1|AAU20846.1| 315|Caenorhabditis elegans Muscle attachment
abnormal protein1, isoform b protein.
Length = 315
Score = 37.9 bits (84), Expect = 0.009
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H +P+VC W C +F S+EL +H+R HT D
Sbjct: 254 HSGEKPFVCKW----QNCSWKFARSDELTRHMRKHTGD 287
>AL034392-4|CAA22307.2| 203|Caenorhabditis elegans Hypothetical
protein Y40B1A.4 protein.
Length = 203
Score = 37.5 bits (83), Expect = 0.011
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H ++P+ C+W +C K+F S+EL +H R+HT +
Sbjct: 129 HAGNKPFACDW----QHCNKKFTRSDELQRHRRTHTGE 162
>AF099922-4|AAK21409.1| 497|Caenorhabditis elegans Hypothetical
protein F56F11.3 protein.
Length = 497
Score = 36.3 bits (80), Expect = 0.026
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H +PY C+W C RF S+EL +H R HT D
Sbjct: 438 HTGEKPYECSW----DGCDWRFARSDELTRHYRKHTGD 471
>Z81547-1|CAB04459.1| 354|Caenorhabditis elegans Hypothetical
protein F53F8.1 protein.
Length = 354
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHT 538
H +PY C W C RF S+EL +H R HT
Sbjct: 277 HSGEKPYPCEW----PGCSWRFARSDELTRHYRKHT 308
>AL132860-29|CAB60505.2| 386|Caenorhabditis elegans Hypothetical
protein Y56A3A.28 protein.
Length = 386
Score = 33.1 bits (72), Expect = 0.24
Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTADGXXXXXXXXXXXSILNQFNPLF 466
H +PY C+ YCGKRF + L H R+HT + +
Sbjct: 231 HTGEQPYGCD------YCGKRFRTTSSLKVHKRAHTGEKPYVCPSCDYRTITKRNLDRHI 284
Query: 465 TTAGLRSAYPTAPLSPLSAS--RYHP 394
+R+A P+ S + RYHP
Sbjct: 285 VNHHIRNAVIKGPIMRRSRTIPRYHP 310
>AC024826-1|AAY86307.1| 221|Caenorhabditis elegans Egr (early
growth factor responsefactor) homolog protein 2 protein.
Length = 221
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHT 538
H RPY C C K+F S+EL +H+R HT
Sbjct: 172 HLQDRPYKCP----RDECDKKFSRSDELTRHIRIHT 203
>Z66516-9|CAN99713.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 32.3 bits (70), Expect = 0.42
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 600 SYCGKRFGNSEELLQHLRSHTAD 532
+YCGK+F L QH+R+HT +
Sbjct: 179 NYCGKKFTQLSHLQQHIRTHTGE 201
>Z66516-8|CAB60308.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 32.3 bits (70), Expect = 0.42
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 600 SYCGKRFGNSEELLQHLRSHTAD 532
+YCGK+F L QH+R+HT +
Sbjct: 183 NYCGKKFTQLSHLQQHIRTHTGE 205
>Z50015-2|CAN99700.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 32.3 bits (70), Expect = 0.42
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 600 SYCGKRFGNSEELLQHLRSHTAD 532
+YCGK+F L QH+R+HT +
Sbjct: 179 NYCGKKFTQLSHLQQHIRTHTGE 201
>Z50015-1|CAB60292.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 32.3 bits (70), Expect = 0.42
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 600 SYCGKRFGNSEELLQHLRSHTAD 532
+YCGK+F L QH+R+HT +
Sbjct: 183 NYCGKKFTQLSHLQQHIRTHTGE 205
>L39212-1|AAC37255.1| 459|Caenorhabditis elegans transcription
factor protein.
Length = 459
Score = 32.3 bits (70), Expect = 0.42
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 600 SYCGKRFGNSEELLQHLRSHTAD 532
+YCGK+F L QH+R+HT +
Sbjct: 183 NYCGKKFTQLSHLQQHIRTHTGE 205
>AL021172-3|CAN99704.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 32.3 bits (70), Expect = 0.42
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 600 SYCGKRFGNSEELLQHLRSHTAD 532
+YCGK+F L QH+R+HT +
Sbjct: 179 NYCGKKFTQLSHLQQHIRTHTGE 201
>AL021172-2|CAB60307.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 32.3 bits (70), Expect = 0.42
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 600 SYCGKRFGNSEELLQHLRSHTAD 532
+YCGK+F L QH+R+HT +
Sbjct: 183 NYCGKKFTQLSHLQQHIRTHTGE 205
>Z83227-4|CAB05729.2| 336|Caenorhabditis elegans Hypothetical
protein F45B8.4 protein.
Length = 336
Score = 31.1 bits (67), Expect = 0.98
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H +RPY C YCGKRF ++ +H HT +
Sbjct: 176 HSDTRPYPCE------YCGKRFHQKSDMKKHTYIHTGE 207
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 594 CGKRFGNSEELLQHLRSHT 538
CGK F S L+ H R HT
Sbjct: 215 CGKAFSQSSNLITHTRKHT 233
>U63996-1|AAC47234.1| 336|Caenorhabditis elegans zinc finger
protein PAG-3 protein.
Length = 336
Score = 31.1 bits (67), Expect = 0.98
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H +RPY C YCGKRF ++ +H HT +
Sbjct: 176 HSDTRPYPCE------YCGKRFHQKSDMKKHTYIHTGE 207
Score = 27.9 bits (59), Expect = 9.1
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -3
Query: 594 CGKRFGNSEELLQHLRSHT 538
CGK F S L+ H R HT
Sbjct: 215 CGKAFSQSSNLITHTRKHT 233
>AC024812-7|AAF59548.2| 419|Caenorhabditis elegans Hypothetical
protein Y54E10BR.8 protein.
Length = 419
Score = 31.1 bits (67), Expect = 0.98
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H RP+VC W CGK+F +S H ++H+ +
Sbjct: 299 HTGERPFVCQW-----ECGKQFASSSAKSHHEKTHSGE 331
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRS 544
H RPY+CN CGK F + +++HL++
Sbjct: 328 HSGERPYICN------VCGKSFTKNSHVIRHLKN 355
>Z69883-6|CAA93744.2| 461|Caenorhabditis elegans Hypothetical
protein C27C12.2 protein.
Length = 461
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 633 RPYVCNWIVGESYCGKRFGNSEELLQHLRSHT 538
RPY C C +RF S+EL +H+R HT
Sbjct: 372 RPYKCP----RDGCDRRFSRSDELTRHIRIHT 399
>Z36752-3|CAA85325.1| 422|Caenorhabditis elegans Hypothetical
protein F35H8.3 protein.
Length = 422
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H +PY C YC K F S+ L H+R+HT +
Sbjct: 322 HTGEKPYSCG------YCMKSFAQSQALTAHIRTHTKE 353
>U39993-1|AAA81086.1| 594|Caenorhabditis elegans Hypothetical
protein F47E1.3 protein.
Length = 594
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H+ RP+VC S C K F S L +HLR H+ +
Sbjct: 518 HENHRPHVC------SVCQKSFSQSSSLNKHLRVHSGE 549
>AF016437-1|AAB65884.2| 690|Caenorhabditis elegans Hypothetical
protein F13H6.1 protein.
Length = 690
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 600 SYCGKRFGNSEELLQHLRSHTAD 532
++C K F N L+ HLRSHT +
Sbjct: 497 NFCNKVFTNRSNLIVHLRSHTGE 519
>U41020-1|AAA82331.2| 470|Caenorhabditis elegans Hypothetical
protein T27B1.2 protein.
Length = 470
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 633 RPYVCNWIVGESYCGKRFGNSEELLQHLRSHT 538
RPY CN C +FG+ EL +H SHT
Sbjct: 82 RPYPCN------LCSSKFGSKMELEEHQNSHT 107
>U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein
protein.
Length = 438
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = -3
Query: 441 YPTAPLSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSPYAMYGQRLGAAAVHQ 265
Y A L +PY+ A SL P GA +P P + P +YG + AAA Q
Sbjct: 85 YSAAALPMFMPLFMNPYAAALRSPSLMF-PMGAMSPTF-PMFPPSPVYGAAIAAAAAKQ 141
>AF101309-5|ABD94097.1| 543|Caenorhabditis elegans Hypothetical
protein H24G06.1e protein.
Length = 543
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 677 SKEPPLVVCRTTS*ADPTFATGSSANLTAASGLEIP 570
S PP + RTTS T S++NL AA+ LE+P
Sbjct: 28 STHPPPLAPRTTSRVLSTAPRRSNSNLFAATNLEVP 63
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/59 (33%), Positives = 26/59 (44%)
Frame = -3
Query: 441 YPTAPLSPLSASRYHPYSKAGLPASLSASPYGAFNPALGPFYSPYAMYGQRLGAAAVHQ 265
Y A L +PY+ A SL P GA +P P + P +YG + AAA Q
Sbjct: 84 YSAAALPMFMPLFMNPYAAALRSPSLMF-PMGAMSPTF-PMFPPSPVYGAAIAAAAAKQ 140
>AC006625-13|ABI18147.1| 273|Caenorhabditis elegans Abnormal
chemotaxis protein 1,isoform b protein.
Length = 273
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHT 538
H RPY C + C K F +S L +HLR+HT
Sbjct: 216 HTGERPYPC------AQCEKAFTDSSTLTKHLRTHT 245
>AC006625-12|AAK68272.2| 214|Caenorhabditis elegans Abnormal
chemotaxis protein 1,isoform a protein.
Length = 214
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHT 538
H RPY C + C K F +S L +HLR+HT
Sbjct: 157 HTGERPYPC------AQCEKAFTDSSTLTKHLRTHT 186
>AC024826-17|AAF60789.1| 662|Caenorhabditis elegans Hypothetical
protein Y55F3AM.14 protein.
Length = 662
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H RPYVC +C K F + L H R+HT +
Sbjct: 268 HTGERPYVCK------FCPKAFASQGNLQSHERTHTGE 299
>U40959-2|AAA81766.1| 413|Caenorhabditis elegans Hypothetical
protein B0310.2 protein.
Length = 413
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 639 LSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHT 538
L +P++C + CGKRF N L +H+ HT
Sbjct: 302 LEKPFICM----HNNCGKRFANKFLLKKHMFIHT 331
>Z92825-6|CAB07314.2| 435|Caenorhabditis elegans Hypothetical
protein C13C4.3 protein.
Length = 435
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 783 SVNNHHLLMSNGSCPAGCTQCEH 715
S+ +MS G+CP+ C C H
Sbjct: 36 SLKYQKAMMSRGTCPSNCKVCRH 58
>Z79755-8|CAB02113.1| 270|Caenorhabditis elegans Hypothetical
protein F43G9.11 protein.
Length = 270
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H RP+ C ++CGK F + L H+ +HT D
Sbjct: 213 HTGLRPFSC------AHCGKSFADRSNLRAHMLTHTGD 244
>Z66496-5|CAA91280.2| 507|Caenorhabditis elegans Hypothetical
protein E04D5.3 protein.
Length = 507
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 447 SAYPTAPLS-PLSASRYHPYSKAGLPASLSASP 352
S YPT P + P+++SRY P PAS +SP
Sbjct: 307 SGYPTRPANYPVASSRY-PIPTTQAPASYPSSP 338
>U23454-9|AAC46522.2| 249|Caenorhabditis elegans Hypothetical
protein C10A4.8 protein.
Length = 249
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHT 538
H +PYVC C K F + L H+R+HT
Sbjct: 218 HTTVKPYVCG------LCDKAFNRASNLHTHMRTHT 247
>AF169201-1|AAF01678.1| 270|Caenorhabditis elegans CES-1 protein.
Length = 270
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H RP+ C ++CGK F + L H+ +HT D
Sbjct: 213 HTGLRPFSC------AHCGKSFADRSNLRAHMLTHTGD 244
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,011,163
Number of Sequences: 27780
Number of extensions: 397797
Number of successful extensions: 1101
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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