Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15e11
(812 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 29 0.039
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 27 0.21
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 26 0.48
L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein pro... 24 1.9
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 22 5.9
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 22 7.8
DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein pr... 22 7.8
AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor ... 22 7.8
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 29.5 bits (63), Expect = 0.039
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H +PYVC CGK F S++L H R+HT +
Sbjct: 198 HTGEKPYVCK------ACGKGFTCSKQLKVHTRTHTGE 229
Score = 26.6 bits (56), Expect = 0.27
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -3
Query: 630 PYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
PY CN CGK F L +H R+HT +
Sbjct: 91 PYRCN------ICGKTFAVPARLTRHYRTHTGE 117
Score = 26.6 bits (56), Expect = 0.27
Identities = 14/38 (36%), Positives = 16/38 (42%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H +PY C YC K F E L H R HT +
Sbjct: 114 HTGEKPYQCE------YCSKSFSVKENLSVHRRIHTKE 145
Score = 26.6 bits (56), Expect = 0.27
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H RPY C+ C + F +S +L +H+R HT +
Sbjct: 142 HTKERPYKCD------VCERAFEHSGKLHRHMRIHTGE 173
Score = 26.2 bits (55), Expect = 0.36
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H RP+ C + C K F S +L+ H+R+HT +
Sbjct: 170 HTGERPHKC------TVCSKTFIQSGQLVIHMRTHTGE 201
Score = 21.8 bits (44), Expect = 7.8
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = -3
Query: 594 CGKRFGNSEELLQHLRSHTADG 529
C K F HLRSH +G
Sbjct: 67 CQKAFDQKNLYQSHLRSHGKEG 88
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 27.1 bits (57), Expect = 0.21
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = -3
Query: 474 PLFTTAGLRSAYPTAPLSPLSASRYHPYSKAGLPASLSASPYGAFNPAL 328
P+ + S YP A SP S S P S Y +NPAL
Sbjct: 385 PIGSGGSFPSLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPAL 433
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 25.8 bits (54), Expect = 0.48
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 645 HQLSRPYVCNWIVGESYCGKRFGNSEELLQHLRSHTAD 532
H +PY C S+C ++F L +HLR HT +
Sbjct: 32 HTGEKPYHC------SHCDRQFVQVANLRRHLRVHTGE 63
Score = 24.2 bits (50), Expect = 1.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -3
Query: 594 CGKRFGNSEELLQHLRSHTAD 532
C KRF L H+R HT +
Sbjct: 15 CHKRFTRDHHLKTHMRLHTGE 35
>L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein
protein.
Length = 81
Score = 23.8 bits (49), Expect = 1.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 594 CGKRFGNSEELLQHLRSHTAD 532
CGK F L H+R+HT +
Sbjct: 48 CGKAFSRPWLLQGHIRTHTGE 68
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 22.2 bits (45), Expect = 5.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 489 LNQFNPLFTTAGLRSAYPTAPLSPLSASRYHPYSKAGL 376
L + +PLFT G A A +P+ HP +A L
Sbjct: 305 LVKISPLFTIWGSLFAKANAVYNPIVYGISHPKYRAAL 342
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 21.8 bits (44), Expect = 7.8
Identities = 6/21 (28%), Positives = 11/21 (52%)
Frame = +1
Query: 409 RRKWAERRRRVCATKTGSREQ 471
RR W R ++C + +E+
Sbjct: 352 RRSWVTRESQICNNSSSDKER 372
>DQ011228-1|AAY63897.1| 486|Apis mellifera Amt-2-like protein
protein.
Length = 486
Score = 21.8 bits (44), Expect = 7.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 576 NSEELLQHLRSHTADG 529
N E L HLR++ A+G
Sbjct: 430 NRSEYLNHLRANVAEG 445
>AB267886-1|BAF46356.1| 567|Apis mellifera ecdysteroid receptor A
isoform protein.
Length = 567
Score = 21.8 bits (44), Expect = 7.8
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 423 SPLSASRYHPYS 388
SP+S S Y PYS
Sbjct: 134 SPMSTSSYDPYS 145
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,058
Number of Sequences: 438
Number of extensions: 4527
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25853301
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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