Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15e09
(870 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 60 3e-09
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 49 4e-06
11_06_0653 + 25911162-25911272,25911648-25911694,25912877-259133... 36 0.056
06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091... 32 0.69
01_06_1696 + 39256171-39256393,39256513-39256595,39256692-392568... 30 2.8
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804... 29 4.8
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 59.7 bits (138), Expect = 3e-09
Identities = 36/138 (26%), Positives = 71/138 (51%)
Frame = -2
Query: 665 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKG 486
SY Y +YF+ +GFAK F++ SD+ + L+K+ RGG++ S T
Sbjct: 106 SYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMRGGRVRLQSIVTPLT 165
Query: 485 DKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVS 306
+ E G + A+ AL +K + E++ +H ++ +D ++T ++E EF+
Sbjct: 166 EFDH---PEKGDALYAMELALALEKLVNEKLHNLHSVASR----CNDPQLTDFVESEFLE 218
Query: 305 QQADTIRSLAGHTSDLKR 252
+Q + I+ ++ + + L+R
Sbjct: 219 EQVEAIKKISEYVAQLRR 236
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 49.2 bits (112), Expect = 4e-06
Identities = 38/146 (26%), Positives = 66/146 (45%)
Frame = -2
Query: 689 LASLYLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDF 510
L S+ SY Y +YF+ +GFAK F++ SD+ + LIK+ RGG++
Sbjct: 130 LCSVEYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRL 189
Query: 509 SSHTTLKGDKGSNYTVEVGHEIGALAKALDTQKQLAERIFFIHREVTKNSDLLHDAEITQ 330
S T E H AL + A I+ + V +D ++T
Sbjct: 190 QSIVT--------PLTEFDHP--EKGDALYGELLSACPIYVFYSMVASR---CNDPQLTD 236
Query: 329 YIEEEFVSQQADTIRSLAGHTSDLKR 252
++E EF+ +Q + I+ ++ + + L+R
Sbjct: 237 FVESEFLEEQVEAIKKISEYVAQLRR 262
>11_06_0653 +
25911162-25911272,25911648-25911694,25912877-25913355,
25914089-25914249,25914324-25914519,25914745-25914807,
25914898-25915047,25915148-25915494
Length = 517
Score = 35.5 bits (78), Expect = 0.056
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Frame = -2
Query: 833 LALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNHVVANELKALASLYLKRSYHY 654
L LGV+A ++ Q + +G + ++ Y + N + + L + + H
Sbjct: 181 LKLGVMAADERISQRIQEGITESFAVKDVRGYSTKKNLNPSPCDPVYKLNKIAMNGDRHK 240
Query: 653 LLSAS-------YFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGG 522
LL + + + Y + E K+ K+SD WE I + T R G
Sbjct: 241 LLEKNGIKTVGDFLSFYDRSPEDLRKILGKISDQDWETIISHAQKCTPRPG 291
>06_03_1127 -
27807784-27807963,27808362-27808460,27809076-27809165,
27809272-27809404,27809539-27809624,27810028-27810099,
27810329-27810415,27810485-27810616,27810718-27810789,
27810957-27811037,27811871-27811963,27812298-27812465
Length = 430
Score = 31.9 bits (69), Expect = 0.69
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -2
Query: 335 TQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVYLFDEYL 189
T Y +S + LAGHT+D+ E G++L LA L D+ L
Sbjct: 272 TYYKTASLISNSCKAVAILAGHTADVSMLAYE-YGRNLGLAFQLIDDVL 319
>01_06_1696 +
39256171-39256393,39256513-39256595,39256692-39256831,
39256882-39257398,39257518-39257565,39257832-39258006,
39258122-39258234,39258329-39258425,39258579-39258798,
39258985-39259144,39259233-39259646
Length = 729
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +3
Query: 231 PVVLGYEPLEVRGVTREATNRIG-LLTHEFLLDVLSDLSIVEEVAVFSDFPVDEENPLGK 407
P LG +P V + + +G ++ VL L + V SD+ ++E+NPLG
Sbjct: 453 PAALGLDPTVANSVHQVINSSLGSVIPRNLQKSVLEGLFSIGRAQV-SDYILNEKNPLGS 511
Query: 408 LLL 416
L L
Sbjct: 512 LRL 514
>01_01_1018 -
8046819-8046876,8046995-8047212,8048099-8048177,
8048455-8048540,8048698-8048983,8049063-8049205,
8049308-8049508,8049626-8049754,8050463-8050738,
8050823-8051098,8051364-8052364,8052452-8052634,
8052865-8052937,8053205-8053313,8053622-8053785
Length = 1093
Score = 29.1 bits (62), Expect = 4.8
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -2
Query: 371 TKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENN 234
T N DL H A+I YI E + ++ GHTSD + F E +
Sbjct: 269 TGNRDLYH-AQIHPYINGEHKRDRCIQMKEKLGHTSDHEGFSREKS 313
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,606,289
Number of Sequences: 37544
Number of extensions: 429280
Number of successful extensions: 1142
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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