Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmmt15e08
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79603-4|CAB01894.1|  800|Caenorhabditis elegans Hypothetical pr...    30   1.8  
L41807-1|AAA67369.1|  402|Caenorhabditis elegans fatty acid desa...    29   3.2  
AL132951-8|CAC44309.1|  402|Caenorhabditis elegans Hypothetical ...    29   3.2  

>Z79603-4|CAB01894.1|  800|Caenorhabditis elegans Hypothetical
           protein M163.4 protein.
          Length = 800

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
 Frame = -3

Query: 246 LKNNECCHQQIKLSTH---YLGQIGLILVRNEYLVNHLYQNVYDVRFFLVSVSDLFSH 82
           L+N+E CHQ   +  H    LG   L+   NE    H+       R  L+ + DL  H
Sbjct: 353 LRNDEICHQMANIEMHTVDILGCRALLEDNNEKTAKHIENERRVQRKALLHIDDLHGH 410


>L41807-1|AAA67369.1|  402|Caenorhabditis elegans fatty acid
           desaturase protein.
          Length = 402

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 384 SFSNNDTLFIFIGNTASTELFSKYF 310
           SFS+N  L  FIG+ A + LFS YF
Sbjct: 129 SFSDNQNLNDFIGHIAFSPLFSPYF 153


>AL132951-8|CAC44309.1|  402|Caenorhabditis elegans Hypothetical
           protein Y67H2A.8 protein.
          Length = 402

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -3

Query: 384 SFSNNDTLFIFIGNTASTELFSKYF 310
           SFS+N  L  FIG+ A + LFS YF
Sbjct: 129 SFSDNQNLNDFIGHIAFSPLFSPYF 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,113,103
Number of Sequences: 27780
Number of extensions: 338334
Number of successful extensions: 691
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)