Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15e05
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.9
SPAC1805.16c |||purine nucleoside phosphorylase |Schizosaccharom... 27 3.3
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 26 5.7
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.7
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 26 7.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 25 10.0
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 10.0
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 25 10.0
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 10.0
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 1.9
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Frame = +2
Query: 302 PPIEPYSCPPSSDPRAKPT-PSSMPATMP 385
PP P S PPS P A P+ P PA P
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/33 (42%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Frame = +2
Query: 302 PPIEPYSCP-----PSSDPRAKPTPSSMPATMP 385
PP P P P S P A P P+ MPA P
Sbjct: 436 PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
>SPAC1805.16c |||purine nucleoside phosphorylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 315
Score = 27.1 bits (57), Expect = 3.3
Identities = 16/49 (32%), Positives = 21/49 (42%)
Frame = +1
Query: 685 TGFLGQFFQEPEHVIDYEAVECARQYGEHYEHNHLRYPQYRT*CRTGIG 831
T FL Q Q+P H Y AR+Y L P+ C +G+G
Sbjct: 4 TSFLHQAKQQPHHTEPYIKALEAREYIIEQVPEELSKPKVAIICGSGLG 52
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 26.2 bits (55), Expect = 5.7
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 631 EALRGYHHALDE-LYRSNRTGFLGQFFQEPEHVIDYEAVECARQYGEHYEHNHLRY 795
E +R +H +DE +YR N+TG + QE Y V + E++++ L +
Sbjct: 697 ENIRDWH--IDERMYRLNKTGRIDFMLQEGALDTSYSYVSAMNAHSEYWKNVDLAH 750
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 5.7
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 1/145 (0%)
Frame = -2
Query: 807 SVLRIPKVIVFIVFAVLAGTFDSFIIYYMFWFLEELAEETGSIATIK-LIEGVVVAAQSF 631
S + + KV+ ++ V+ D+ I+ + ++ E G + + +++ +F
Sbjct: 84 STVSVSKVLPALLLGVVLAALDNTIVASTY---TKIGAEFGKFSQVSWTATAYMISCTAF 140
Query: 630 VGELLFFFCSGKIIKRWGYGTTLTFSLFCYGIRMALISFIRNPWQLVLIEGIMQGPTYAL 451
+ LF GK +G TL + +GI L R+ WQLV I G
Sbjct: 141 --QPLF----GKFCDIYGRKKTLLAAYCVFGIGCFLCGTSRSLWQLVAARAI-AGIGGGG 193
Query: 450 CYATIVGYAAHVAPDGYSATVQGIV 376
+T+ + + P T QGI+
Sbjct: 194 MNSTVSILMSDIVPLKQRGTYQGII 218
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 7.5
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 593 ILPEQKKNRSSPTKLCAATTTP-SMSFIVAIEPVSSANSSRNQ 718
ILP Q + KL ++TTP S+S IEP+ S + +
Sbjct: 539 ILPSQHDTPHNSVKLTGSSTTPASVSLRQMIEPLLSRTPPKGE 581
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.4 bits (53), Expect = 10.0
Identities = 14/48 (29%), Positives = 18/48 (37%)
Frame = +2
Query: 302 PPIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PSGAT*AAYPTIVA 445
PP+ P S P P P M P + P+G A P + A
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPA 1737
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 10.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 587 FIILPEQKKNRSSPTKLCAATTTPSMSFIVAI 682
FII P+ +R+ P KL +++ M FI+ +
Sbjct: 1646 FIIQPQLLSDRTGPWKLLNESSSMDMRFIIEL 1677
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +1
Query: 160 TNEPSHLRLITIVIRPTGISPIEFQEHCGVQGGRDHRQYAEHSERISTAHRTVQL 324
T+ PSH + ++PT I+ E + G + A+H E++ T T L
Sbjct: 122 TSRPSHTLWVLQPLKPTRITRQEIGQQLTETLGFGAQLLAQHLEKLQTVPSTDSL 176
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 302 PPIEPYSCPPSSDPRAKPTPSSMPA 376
PPI P + P + P +P ++PA
Sbjct: 252 PPIPPQALPANGTPNTLASPVTLPA 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,360,613
Number of Sequences: 5004
Number of extensions: 68904
Number of successful extensions: 229
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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