Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmmt15e05
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0070 - 542603-542686,542803-543441 34 0.12
10_08_0071 - 14652607-14653716 31 0.85
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 31 1.1
05_04_0091 + 17839118-17839303,17840876-17840923,17841381-178415... 31 1.5
12_01_0927 + 9196230-9196427,9196499-9197190,9197317-9198351,919... 30 2.0
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597... 30 2.0
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.6
02_02_0663 - 12740733-12741104,12741260-12741326,12741709-127418... 30 2.6
07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591... 29 3.4
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489... 29 3.4
09_04_0487 - 18014469-18014660,18014935-18015016,18015297-180155... 29 4.5
09_02_0349 - 7632140-7632234,7632348-7632449,7632864-7632962,763... 29 4.5
07_03_1284 + 25463476-25463557,25465088-25465220,25465307-254653... 29 4.5
06_03_1457 - 30287185-30287287,30287691-30287759,30288212-302883... 29 4.5
09_02_0601 + 11112201-11112386,11112471-11114080,11114345-111145... 29 6.0
09_02_0543 + 10427321-10428315,10428440-10429154 28 7.9
08_01_0059 - 394001-394708 28 7.9
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851... 28 7.9
07_01_0126 - 947072-948687,949454-949627,950117-951572 28 7.9
04_03_0904 + 20717005-20718087 28 7.9
01_03_0117 + 12684729-12685886,12685978-12686145,12686292-126863... 28 7.9
01_01_0616 + 4586086-4586835 28 7.9
>01_01_0070 - 542603-542686,542803-543441
Length = 240
Score = 34.3 bits (75), Expect = 0.12
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +2
Query: 302 PPIEPYSCPPSSDPRAKPTPSSMPATMPWTV--AE*PSGAT*AAYPTIVA*QRAYVGPCI 475
PP+ P PP S P A P P+ P+T P AE P+ A P VA A + P
Sbjct: 103 PPVTP---PPVSPPPATPPPALPPSTPPPVAAPAEAPAALPPATTPPPVAEAPAELPPAE 159
Query: 476 IPSINTNCH 502
P+ + N H
Sbjct: 160 APTKSKNKH 168
>10_08_0071 - 14652607-14653716
Length = 369
Score = 31.5 bits (68), Expect = 0.85
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = -2
Query: 666 LIEGVVVAAQSFVGELLFFFCSGKIIKRWGYGTTLTFSLF-----CYGIRMALISFIRNP 502
+ E ++VAA + E L C ++ K G GT + C G++ A F+R+P
Sbjct: 272 MCEHLLVAADRYNLERLKLICEERLCKYIGIGTVMDILALADQHHCKGLKKACFDFLRSP 331
Query: 501 WQLVLIEG 478
L + G
Sbjct: 332 ANLSAVTG 339
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 31.1 bits (67), Expect = 1.1
Identities = 35/129 (27%), Positives = 51/129 (39%), Gaps = 1/129 (0%)
Frame = +2
Query: 302 PPIEPYSCPPSSDPRAKPTPSSMPA-TMPWTVAE*PSGAT*AAYPTIVA*QRAYVGPCII 478
PP+ P + PP+ P A P P +PA +P + P+ A A P I A V P +
Sbjct: 63 PPLPPLTPPPAIVPPALPPPPPLPAIVVPPALPPTPAIAVPPALPPI----PAIVPPSLP 118
Query: 479 PSINTNCHGFRMNDINAILIP*QNNENVSVVP*PQRFIILPEQKKNRSSPTKLCAATTTP 658
P+ N A L P + P P +K S LC+ T P
Sbjct: 119 PTPEANL------PCVAELAPCSEFYRNATAK-PTGACCAPLKKAYESELGCLCSVLTNP 171
Query: 659 SMSFIVAIE 685
+M+ V ++
Sbjct: 172 AMAATVGVD 180
>05_04_0091 +
17839118-17839303,17840876-17840923,17841381-17841526,
17841616-17841664,17842260-17842316,17842460-17842627,
17842950-17843011,17843103-17843190,17843277-17843388,
17843472-17843548,17843622-17843759,17844424-17844588,
17844667-17844780,17845026-17845122,17845242-17845390
Length = 551
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = -2
Query: 630 VGELLFFFCSGKIIKRWGYG--TTLTFSLFCYGIRMALISFIRNPWQLVLIEGIMQGPTY 457
VGE+L F+ + + WG+G T + C+ + N ++V +EGIM T
Sbjct: 336 VGEVLQFYDNDRRFPAWGFGAKTPQGYISHCFNLNAT-----TNDCEVVGVEGIMSAYTS 390
Query: 456 ALCYATIVG 430
L T+ G
Sbjct: 391 TLYSVTLAG 399
>12_01_0927 +
9196230-9196427,9196499-9197190,9197317-9198351,
9198437-9198688,9198769-9198879,9198969-9199050,
9199325-9199516
Length = 853
Score = 30.3 bits (65), Expect = 2.0
Identities = 23/64 (35%), Positives = 29/64 (45%)
Frame = +2
Query: 305 PIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PSGAT*AAYPTIVA*QRAYVGPCIIPS 484
P P S PP P +PTP P+ P A P A+ PT +A Q A P PS
Sbjct: 410 PRHPPSPPPLRSPPRQPTPPPSPSQQPPLPAPQPVQAS----PTSLAKQHAPPAP---PS 462
Query: 485 INTN 496
+ T+
Sbjct: 463 VQTS 466
>03_02_0155 -
5974118-5974173,5974242-5974314,5974393-5974500,
5975189-5976914,5977065-5977620,5978008-5978485
Length = 998
Score = 30.3 bits (65), Expect = 2.0
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 302 PPIEPYSCPPSSDPRAKPTPSSMPAT-MPW-TVAE*PSGAT 418
PP P PPSS P P+P++ P T W + E GAT
Sbjct: 91 PPPSPPPPPPSSPPPVPPSPTAAPTTGQSWNSEPERKEGAT 131
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 299 RPPIEPYSCPPSSDPRAKPTPSSMPATMP 385
RPP P SS PR+ P+P+ PA P
Sbjct: 253 RPPSTPAITAVSSVPRSSPSPAPAPAARP 281
>02_02_0663 -
12740733-12741104,12741260-12741326,12741709-12741809,
12741852-12742273,12743678-12743685,12745164-12745396
Length = 400
Score = 29.9 bits (64), Expect = 2.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 296 YRPPIEPYSCPPSSDPRAKPTPSS 367
Y PP PY P + PRA P P+S
Sbjct: 50 YLPPPPPYPIPQPARPRAAPPPAS 73
>07_01_0770 +
5912412-5912476,5913759-5913779,5914015-5914638,
5915264-5915439,5915526-5916124
Length = 494
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/71 (21%), Positives = 36/71 (50%)
Frame = -2
Query: 828 DSGAALRSVLRIPKVIVFIVFAVLAGTFDSFIIYYMFWFLEELAEETGSIATIKLIEGVV 649
DS A RSV+++ + ++ ++ + I+++ WF E + + S A + + +
Sbjct: 254 DSLVATRSVMKVRTFQIIVLQGIIGSLPWTAIVFFTMWF-ELIGFDNNSSAALNSLFAIG 312
Query: 648 VAAQSFVGELL 616
A +F+G ++
Sbjct: 313 CATGAFLGGVI 323
>06_03_1450 +
30246702-30247346,30248603-30248689,30248789-30248920,
30249016-30249162,30250375-30250440,30250519-30250629,
30251551-30251584,30251667-30251743,30251829-30251906
Length = 458
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +2
Query: 278 LNTRNEYRPPIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PSGAT*AAYPTIVA*QRA 457
++ EY P +PY P S+ P+ S+ P T P+ + + A YP A
Sbjct: 1 MHPSGEYSPYYQPYPSPTSAPLATYPSASAPPYT-PYPATDYAAPAAYPTYPPPPADPPQ 59
Query: 458 YVGPCIIP 481
Y P P
Sbjct: 60 YAPPPAAP 67
>09_04_0487 -
18014469-18014660,18014935-18015016,18015297-18015548,
18015634-18017789
Length = 893
Score = 29.1 bits (62), Expect = 4.5
Identities = 23/64 (35%), Positives = 28/64 (43%)
Frame = +2
Query: 305 PIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PSGAT*AAYPTIVA*QRAYVGPCIIPS 484
P P S PP P +PTP P+ P A P A+ PT A Q A P PS
Sbjct: 487 PRHPPSPPPLRSPPRQPTPPPSPSQQPPLPAPQPVQAS----PTSPAKQHAPPAP---PS 539
Query: 485 INTN 496
+ T+
Sbjct: 540 VQTS 543
>09_02_0349 -
7632140-7632234,7632348-7632449,7632864-7632962,
7633517-7633622,7633897-7633978,7634068-7634178,
7634259-7634510,7634596-7635688,7636157-7636829,
7636920-7637117
Length = 936
Score = 29.1 bits (62), Expect = 4.5
Identities = 23/64 (35%), Positives = 28/64 (43%)
Frame = +2
Query: 305 PIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PSGAT*AAYPTIVA*QRAYVGPCIIPS 484
P P S PP P +PTP P+ P A P A+ PT A Q A P PS
Sbjct: 423 PRHPPSPPPLRSPPRQPTPPPSPSQQPPLPAPQPVQAS----PTSPAKQHAPPAP---PS 475
Query: 485 INTN 496
+ T+
Sbjct: 476 VQTS 479
>07_03_1284 +
25463476-25463557,25465088-25465220,25465307-25465378,
25465476-25465544,25465629-25465700,25465792-25465860,
25466155-25466220,25466299-25466364,25466452-25466786,
25466931-25467214,25467796-25468067,25468152-25468287,
25468625-25468755,25468890-25469046,25469185-25469327,
25470105-25470190,25471530-25472962,25474563-25474712,
25475221-25475322,25475467-25475568
Length = 1319
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +2
Query: 302 PPIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PS 409
PP PY PP P K S PA TV PS
Sbjct: 222 PPPPPYQSPPYKSPPYKSPQSRQPAPPTTTVNNNPS 257
>06_03_1457 - 30287185-30287287,30287691-30287759,30288212-30288351,
30288447-30288641,30288743-30289363,30289688-30290257,
30290332-30293638,30293764-30293863,30293978-30295014,
30295256-30295604,30296299-30296374,30296456-30297022,
30297094-30297238,30298281-30298405,30298491-30298582,
30298646-30298828,30298946-30299058,30299499-30299649,
30299720-30299882
Length = 2701
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -2
Query: 792 PKVIVFIVFAVLAGTFDSFIIYYMFWFLEELAEETGSIATIKLIEGVVVAA 640
PK++V ++FA+ T + + +F++ LAE S +IK + VVAA
Sbjct: 1106 PKIMVLLIFAIDKETLQMDGLDVLHFFIKRLAEV--SCTSIKYVMSQVVAA 1154
>09_02_0601 +
11112201-11112386,11112471-11114080,11114345-11114579,
11115233-11115358
Length = 718
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/55 (36%), Positives = 24/55 (43%)
Frame = +2
Query: 305 PIEPYSCPPSSDPRAKPTPSSMPATMPWTVAE*PSGAT*AAYPTIVA*QRAYVGP 469
P P S PP P +PTP P+ P +A P A+ PT A Q A P
Sbjct: 422 PRHPSSPPPLRSPPRQPTPPPSPSQQPPLLAPQPVQAS----PTSPAKQHAPPAP 472
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +2
Query: 302 PPIEPYSCPPSSDPRAKPTP-SSMPATMPW 388
PP + PP P A P+P S P+ PW
Sbjct: 59 PPAPDMTPPPGPGPAAAPSPHSPSPSNAPW 88
>08_01_0059 - 394001-394708
Length = 235
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 302 PPIEPYSCPPSSDPRAKPTPS-SMPATMP 385
P PY+ PP S P A P P S PA +P
Sbjct: 38 PTPRPYAPPPPSHPLAPPPPHISPPAPVP 66
>07_01_1005 +
8509777-8509968,8510059-8510205,8510326-8510544,
8510652-8510761,8511337-8511391,8511447-8511631,
8512537-8512599,8513713-8513782,8514159-8514242,
8515925-8516159,8516213-8516517
Length = 554
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 308 IEPYSCPPSSDPRAKPTPSSMPATMP 385
+ P+ PPS PRA +PS+ P P
Sbjct: 491 LSPWWSPPSPHPRATSSPSTSPRCSP 516
>07_01_0126 - 947072-948687,949454-949627,950117-951572
Length = 1081
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +1
Query: 364 VHAGHYALDSRRVTVRGHMSRVPDYSSVAKGICRALHNPLYQHQLPRIPNERYQRH 531
++ G+Y LDS R GH P V+ ++ NP + + R+ + Q H
Sbjct: 71 MYRGYYTLDSFRC--HGHQEYNPKDLEVSSSFAPSMFNPAKRVRFCRVTGQSVQEH 124
>04_03_0904 + 20717005-20718087
Length = 360
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 299 RPPIEPYSCPPSSDPRAKPTPSSMPAT 379
+P PY+ PP+ P+ KPTP+ P T
Sbjct: 266 KPTPTPYT-PPTYKPQPKPTPTPTPYT 291
>01_03_0117 +
12684729-12685886,12685978-12686145,12686292-12686336,
12686438-12687280
Length = 737
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +2
Query: 302 PPIEPYSCPPSSDPRAKPTPSSMPATMP 385
PP PP PR KP P+ P P
Sbjct: 86 PPAGVEDAPPRRSPREKPCPTMQPPVKP 113
>01_01_0616 + 4586086-4586835
Length = 249
Score = 28.3 bits (60), Expect = 7.9
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 189 HHRHSSNRNQPDRIPRTLRRAGR 257
HHRH + + PD + R RR GR
Sbjct: 125 HHRHHHDPSLPDAVLRVERRGGR 147
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,839,956
Number of Sequences: 37544
Number of extensions: 504148
Number of successful extensions: 2137
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2098
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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